PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2AL_605C25CDF.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29094.4 Da PI: 6.3109 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.3e-19 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed+ll+d v+q+G g+W+++++ g++R++k+c++rw +yl Traes_2AL_605C25CDF.2 21 KGPWTTQEDKLLLDHVAQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.8e-17 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ +v+++ ++G++ W+tIar ++ gRt++++k++w+++ Traes_2AL_605C25CDF.2 74 RGKMTPQEESTIVQLHSLWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118 89********************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.568 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-29 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-16 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-11 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.696 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-15 | 74 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-10 | 76 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 76 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MAEAEGQLAA CWGKQDDEWR KGPWTTQEDK LLLDHVAQHG EGRWNSVSKL TGLKRSGKSC 60 RLRWVNYLRP DLKRGKMTPQ EESTIVQLHS LWGNRWSTIA RSLPGRTDNE IKNYWRTHYK 120 KGKPSKNIER ARARFLMQRR EMQQQQQQQQ QKLLLGQGKD AELASATAED DVDEKMTGNV 180 GPAATALADH GHEELIMQDV LDFLCPMSCA LLHSAGQSGS CGASTSEEYG STEDDGATWG 240 SLWNLEDVAH DGDGGACALW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 16 | 115 | 22 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-119 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160476.1 | 1e-172 | transcription factor MYB3-like | ||||
TrEMBL | A0A3B6B2B6 | 0.0 | A0A3B6B2B6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L929 | 0.0 | A0A446L929_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_605C25CDF.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13480.1 | 8e-63 | myb domain protein 79 |
Publications ? help Back to Top | |||
---|---|---|---|
|