PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_5BA7E2623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 312aa MW: 33632.1 Da PI: 7.1693 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 5.7e-14 | 42 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+ +++a+ k +g Traes_2AL_5BA7E2623.1 42 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 92 89********.7******5553..2.26**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.60E-25 | 42 | 102 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-17 | 42 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-10 | 42 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.186 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-16 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEADINFSLE DYDDIKQMGN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG 60 QFLGKKYVYL GLFDTEEEAA RSYDRAAIKC NGKDAVTNFD PSTYAEEFEP AASTGDAEQN 120 LDLSLGSSGG SNKRGSLDGG GGDDEGAAGS DQRVPMAFEL DWQTARSTKA KFDQNSTHRQ 180 MPPPALQASH MAFSPRQHQF MGSADPGTAG GLSLTVGAGA GGLAGHWPPH HQYQPPPPPQ 240 QQQRMHGWGN VVPGRSWQPP QPPPHHQAGP PPNNAAAAAA AAAASSRFPP YIAAQAQSWL 300 QKNGFHSLAR PT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360149 | 0.0 | AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04. | |||
GenBank | AK371953 | 0.0 | AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161606.1 | 1e-171 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | B8AVJ9 | 1e-134 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | M5AAY8 | 0.0 | M5AAY8_9POAL; TaAP2-A | ||||
TrEMBL | M5AB35 | 0.0 | M5AB35_WHEAT; TaAP2-A | ||||
TrEMBL | M5AB58 | 0.0 | M5AB58_WHEAT; TaAP2-A | ||||
STRING | Traes_2AL_5BA7E2623.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 3e-65 | AP2 family protein |
Publications ? help Back to Top | |||
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