PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_4D0085951.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 649aa    MW: 72829 Da    PI: 5.3271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_4D0085951.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-085376327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C +f++ G C  Gd+C+F+Hgp
  Traes_2AL_4D0085951.2 53 MVPCYYFQK-GNCIKGDKCPFSHGP 76
                           789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.812126IPR000571Zinc finger, CCCH-type
SMARTSM003560.011225IPR000571Zinc finger, CCCH-type
PfamPF146080.0023524No hitNo description
SMARTSM003561.6E-65076IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4745077IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65175IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-45476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MNPRDCYYWL NGNCLNPKCS FRHPPIDGMF GASTPGIPAV SSHYAAYNSG KQMVPCYYFQ  60
KGNCIKGDKC PFSHGPQPAG NNPPEQVAKV SSFPLEQPQT QKNEFLGVKE FAQTNHLIQQ  120
GGPISDDRSK SVNRAAGNFA RTAAAAIPAE LASSAVKSLP KSGSVQNSMP AVNKSFRTSS  180
GEDHPECYQN NLPVETDPMQ DWNQPYHTPP QDDMPEDSRD ADDLLGESSP GFDVLVANDA  240
DAGAYMHDPD DFGRDIYPVE DYEYAPADFE IQPHHERELF NGMGEQGPIG QMYDGYDRKR  300
RRTSSERNLD RPSYSERRSR QRETGPVEID GSDLRHRLRR RKINGSPGIS PERSGESRRR  360
DDRYRERAYD GHRTHRDRHQ GPRGSTLSSR LQGRIKLPGR SPDRVDARSE RERDRRQLRD  420
RLSPVVPMDI QGGRHREAGH HQERIRQRSS ERASSARIAD GKHSRQNVTD SLNFASRKDF  480
GPESRKANGS VQSEASLDFE GPTPLSVILQ RKRQAACGNG NGSSAHNVKE DKSAAVSHRQ  540
AESLVEAEKE GYDNTISSEE CKSRSGDEEY KEEGQVPASS SHGDKAEAED MIEVENQEAD  600
NYEQRQGESE YEATEGYEYK SEDENAYQDD EEEFEDDDDF ARKVGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301RKRRR
2297302RKRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757340.0AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191143.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A446LMB20.0A0A446LMB2_TRITD; Uncharacterized protein
STRINGTRIUR3_20038-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]