PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_48B239DD6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 777aa MW: 83524.3 Da PI: 5.7346

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_48B239DD6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.3	1.7e-20	116	172	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Traes_2AL_48B239DD6.1 116 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 172 688999************************************************995 PP
2	START	187	9.7e-59	293	512	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla 77 ela +a++el+++a +++p+W + + ++++e+ + f + ++ +ea+r+ +vv+m++a lve+l+d++ q+ + Traes_2AL_48B239DD6.1 293 ELAVAAMEELLRMARLDDPLWATTVdqaLALDEEEYARMFIDPRGglgpkqygLVSEASRDAAVVIMTPASLVEILMDVN-QYAAVFS 379 57899******************8776688888888886666679*****************************.6666665 PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154 +a+tlev+s+g galq+m+ e+q++splvp R+++fvRy+++ +g w++vdvS+d q + +++++pSg+li Traes_2AL_48B239DD6.1 380 sivsRAATLEVLSTGvagcydGALQVMSVEFQVPSPLVPtRESYFVRYCKRNADGAWAVVDVSLDGLQGV-------KCRRRPSGCLI 460 5555*********************************************************99985.......699**** PP EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ +ng+skvtwvehv++++r++h+++++lv+sgla+ga++wv l+rqce+ Traes_2AL_48B239DD6.1 461 QEAPNGYSKVTWVEHVEVDDRSVHNIYKPLVGSGLAFGARRWVGVLGRQCER 512 ************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-22	102	171	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-19	106	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	113	173	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	114	177	IPR001356	Homeobox domain
CDD	cd00086	1.33E-19	115	174	No hit	No description
Pfam	PF00046	6.3E-18	116	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.86	284	515	IPR002913	START domain
CDD	cd08875	1.58E-108	290	511	No hit	No description
SuperFamily	SSF55961	9.77E-32	291	514	No hit	No description
SMART	SM00234	6.2E-51	293	512	IPR002913	START domain
Pfam	PF01852	3.7E-50	294	512	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.1E-4	355	478	IPR023393	START-like domain
SuperFamily	SSF55961	3.85E-23	540	764	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MMIPARHMPS SMIGRSSGGA PYGSSSALSL GQPNLLDGSN QHLLPHHLLE QIPARAAESG 60 DNNNGSVGGG VGMIRGRDSI DPLGDEFESR SGSENVDGDA VDNAEQDQDP NQRPRKKRYH 120 RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELGLEPLQVK FWFQNKRTQM KNQHERHENS 180 QLRADNDKLR AENMRYKEAL SSASCPNCGG PAALGEMSFD EHHLRVENAR LRDEIDRISA 240 IAAKYVGKPM VPFPVLSSPL AAAPGASAYD VFAGAASVLQ APPDDKQQGV VVELAVAAME 300 ELLRMARLDD PLWATTVDQA LALDEEEYAR MFIDPRGGLG PKQYGLVSEA SRDAAVVIMT 360 PASLVEILMD VNQYAAVFSS IVSRAATLEV LSTGVAGCYD GALQVMSVEF QVPSPLVPTR 420 ESYFVRYCKR NADGAWAVVD VSLDGLQGVK CRRRPSGCLI QEAPNGYSKV TWVEHVEVDD 480 RSVHNIYKPL VGSGLAFGAR RWVGVLGRQC ERLASAMASN IPTSDIGVIT SSEGRKSMLK 540 LAERMVASFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP 600 VPPKRVFDFL RDETSRSEWD ILSNGGIVQE MAHIANGRDH GNCVSLLRVN STNSNQSNML 660 ILQESCTDAS GSYVIYAPVD VVAMNVVLNG GDTDYVALLP SGFAILPDGP AGTMHAAAGA 720 TGTGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKTAVISN GGASPPQ

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MMIPARHMPS SMIGRSSGGA PYGSSSALSL GQPNLLDGSN QHLLPHHLLE QIPARAAESG  60
DNNNGSVGGG VGMIRGRDSI DPLGDEFESR SGSENVDGDA VDNAEQDQDP NQRPRKKRYH  120
RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELGLEPLQVK FWFQNKRTQM KNQHERHENS  180
QLRADNDKLR AENMRYKEAL SSASCPNCGG PAALGEMSFD EHHLRVENAR LRDEIDRISA  240
IAAKYVGKPM VPFPVLSSPL AAAPGASAYD VFAGAASVLQ APPDDKQQGV VVELAVAAME  300
ELLRMARLDD PLWATTVDQA LALDEEEYAR MFIDPRGGLG PKQYGLVSEA SRDAAVVIMT  360
PASLVEILMD VNQYAAVFSS IVSRAATLEV LSTGVAGCYD GALQVMSVEF QVPSPLVPTR  420
ESYFVRYCKR NADGAWAVVD VSLDGLQGVK CRRRPSGCLI QEAPNGYSKV TWVEHVEVDD  480
RSVHNIYKPL VGSGLAFGAR RWVGVLGRQC ERLASAMASN IPTSDIGVIT SSEGRKSMLK  540
LAERMVASFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP  600
VPPKRVFDFL RDETSRSEWD ILSNGGIVQE MAHIANGRDH GNCVSLLRVN STNSNQSNML  660
ILQESCTDAS GSYVIYAPVD VVAMNVVLNG GDTDYVALLP SGFAILPDGP AGTMHAAAGA  720
TGTGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKTAVISN GGASPPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361971	0.0	AK361971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199198.1	0.0	homeobox-leucine zipper protein ROC2-like
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A3B6B5D1	0.0	A0A3B6B5D1_WHEAT; Uncharacterized protein
TrEMBL	A0A446LGZ8	0.0	A0A446LGZ8_TRITD; Uncharacterized protein
STRING	Traes_2AL_48B239DD6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]