PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2AL_41E2E66D9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 94aa MW: 10754.3 Da PI: 10.0091 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.3 | 9.9e-31 | 2 | 88 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F Traes_2AL_41E2E66D9.1 2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRGGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFC 88 89***************************955556888**********************************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.11E-25 | 1 | 87 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-39 | 1 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-29 | 1 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.536 | 2 | 94 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-17 | 2 | 91 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-27 | 2 | 88 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DAAANEKGLL LSFEDRGGKL WRFRYSYWNS 60 SQSYVMTKGW SRFVKEKRLD AGDTVSFCRG AADA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-53 | 1 | 94 | 7 | 100 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-53 | 1 | 94 | 7 | 100 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374546 | 1e-144 | AK374546.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068K15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174582.1 | 2e-63 | B3 domain-containing protein Os02g0683500-like | ||||
Swissprot | Q7F9W2 | 2e-62 | Y4814_ORYSJ; B3 domain-containing protein Os04g0581400 | ||||
TrEMBL | A0A3B6B324 | 1e-62 | A0A3B6B324_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LBI4 | 1e-62 | A0A446LBI4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_41E2E66D9.1 | 1e-64 | (Triticum aestivum) | ||||
STRING | Traes_2BL_439C794F5.3 | 1e-62 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01030.1 | 2e-55 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|