PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_411B944D6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 278aa    MW: 30333.2 Da    PI: 4.4385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_411B944D6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-1375118654
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +Er RR+++N+++ +Lr+++P+      +K++Ka+i + A+eYI++L
  Traes_2AL_411B944D6.1  75 ILMERDRRRKLNEKLYTLRSVVPNI-----TKMDKASIIKDAIEYIQQL 118
                            579*********************7.....7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.22869118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1773133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-1473123No hitNo description
PfamPF000108.4E-1174118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1775134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1575124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.78E-5196265No hitNo description
PROSITE profilePS516718.772200276IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDPDMGENFA YYWETQRYLE SEELVDSIFV GATEDAISYY DSSSPDGSHS SSTPMGAAMP  60
GAGMGMSGTG ANKNILMERD RRRKLNEKLY TLRSVVPNIT KMDKASIIKD AIEYIQQLHA  120
EERQMEAEVS ALESATGAED DYDGGLSVDQ VSSAQRKKVK RALSVSSMND ALLAAAAAVA  180
SPPVEVLELR VSEVSEKVLV VSVTCSKQRD AMTKVCRALE ELRLRVITAN ITSVSGCLMH  240
TLFVEVDEMD RFQMKEAVEA ALSQLDSTGS PPLSSMSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509170.0AK250917.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98c12, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160196.11e-168transcription factor bHLH35-like
TrEMBLA0A3B6AXQ30.0A0A3B6AXQ3_WHEAT; Uncharacterized protein
TrEMBLA0A446L1520.0A0A446L152_TRITD; Uncharacterized protein
STRINGTraes_2AL_411B944D6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-42bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]