PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_2A39D7445.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 552aa MW: 58853.6 Da PI: 7.2108 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.5 | 2.8e-12 | 270 | 326 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a+++a++k++g Traes_2AL_2A39D7445.2 270 SQHRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 326 689******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 51.9 | 1.9e-16 | 371 | 420 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+fgt eeAa+a++ a+ k++g Traes_2AL_2A39D7445.2 371 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 420 9***************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-13 | 270 | 335 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.88E-16 | 270 | 334 | No hit | No description |
Pfam | PF00847 | 3.6E-9 | 271 | 326 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-22 | 271 | 340 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-12 | 271 | 335 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.608 | 271 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 272 | 283 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.80E-23 | 369 | 430 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-17 | 369 | 429 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-32 | 370 | 434 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 370 | 428 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 370 | 428 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-11 | 371 | 420 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 410 | 430 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MTNNNGNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQQ HQGLFYPSSV AAAYSLGSDV 60 ATGGYYSQLA SMPLKSDGSL CIMEALRRTD QQDHHGTYFI TGSPKLEDFL GAGQPAMALS 120 LDNTSNFYYY SGGGGAGGQH GQSHGGGFLQ QAYDVYGGPA TASVLAADED AAAATAMANW 180 VQVARGATAY ATAENVLSAA ADRQQHLHHH PLALSMSSAG SLSSCVTAGA EYGGVVATVD 240 GGRKRGGATA GQKQPVHHRK SIDTFGQRTS QHRGVTRHRW TGRYEAHLWD NSCKKEGQTR 300 KGRQGGYDME EKAARAYDQA ALKYWGPSTH INFPLEDYQQ ELEEMKNMTR QEYVAHLRRK 360 SSGFSRGASM YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FGTQEEAAEA YDIAAIKFRG 420 LNAVTNFDIT RYDVDKIMAS NTLLPGELAR RNKDANAAPL PLPAPDDCAA SALVPVSTPG 480 TDTGGSGQHR NQDVMSSGEA FSALHDLVTV DGHTAQGGNG ARVHMSMSGA SSLVTSLSNS 540 REESPDRGGG LS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088263 | 1e-170 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155443.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q84Z02 | 0.0 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3B6AYH1 | 0.0 | A0A3B6AYH1_WHEAT; PARG-2A | ||||
STRING | Traes_2AL_2A39D7445.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-122 | AP2 family protein |
Publications ? help Back to Top | |||
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