PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_25382F498.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 274aa MW: 31673.6 Da PI: 10.1534 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92 | 4.3e-29 | 36 | 140 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ltpsdv+k++rlv+pk++ae++ ++ l++ede ++ W+++++y+ +s++yvltkGW+++vk+++L++gD+v Traes_2AL_25382F498.2 36 FEKTLTPSDVGKLNRLVIPKQHAERYfplnggdsP--GDKDLLLSFEDEASKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIV 121 99****************************76332..235667999****************************************** PP EEEE-SS.SEE..EEEEE- CS B3 81 vFkldgr.sefelvvkvfr 98 F++++ ++ ++ +r Traes_2AL_25382F498.2 122 HFERVRGlGTGDRLFICCR 140 ***8866544444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-39 | 30 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-28 | 33 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.46E-27 | 34 | 128 | No hit | No description |
SMART | SM01019 | 2.4E-22 | 36 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-26 | 36 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 36 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MAMHHLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKTL TPSDVGKLNR LVIPKQHAER 60 YFPLNGGDSP GDKDLLLSFE DEASKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDI 120 VHFERVRGLG TGDRLFICCR RRGKSALPPP VRVSPPALNA GEQQPWSPMC YSTSGSYPTS 180 PANSHAYRRS VEQDHSDMLH LTPFSGEFLQ VTRRERQMPR AVRHRGRRRD VSGCSESTST 240 AVRSQRQRQQ RQCTTTPTRA PTLQWSRCQL TGQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-48 | 31 | 144 | 3 | 115 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-48 | 31 | 144 | 3 | 115 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195164.1 | 1e-132 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 1e-99 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A287QXP0 | 1e-159 | A0A287QXP0_HORVV; Uncharacterized protein | ||||
STRING | Traes_2AL_25382F498.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 6e-50 | B3 family protein |
Publications ? help Back to Top | |||
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