PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_1FB739291.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 436aa MW: 44910.9 Da PI: 11.02

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_1FB739291.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	248	271	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg +F r ++L+ H+ t H Traes_2AL_1FB739291.1 248 FPCPDCGDVFVRAESLHLHQATrH 271 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.014	248	276	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	250	271	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MVEPSRSAGA KSSTTTTPAR KKKLTATSPA TPKPDKEKPA DQGGKKQQSS HGSSATAAAA 60 DSPSYRLALR SLFSCRNSHA AQHQQHNQRA APPQPAPAQA DDASSRRCKK KSKKQTQLGC 120 SASICKLRDA SPRRVTLHRP PAEEEPPSGA ATGAGEPCKR RASVSGAGER RVKKPLQQPQ 180 QGQGNEAAGA VVVGSSSRHW GSSTASSSSS TAGGGGSSFR LRRLSGCYEC HMVVDPAGGG 240 TSMRAAIFPC PDCGDVFVRA ESLHLHQATR HAVSELGPED TSRNIIEIIF QSSWLKKQTP 300 VCAVDRILKV HNAPAXXXXX XXXXXXXXRP GRAGGAPAPA DAPPTATSCS ASTAPRSRAP 360 SARGAPPTSA TAPATPPAPR AGSFATGSSS GRPGSGPWPP AAARTTMPWP WVGRRGRAAE 420 ESSAGPCSCA GSSPGG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MVEPSRSAGA KSSTTTTPAR KKKLTATSPA TPKPDKEKPA DQGGKKQQSS HGSSATAAAA  60
DSPSYRLALR SLFSCRNSHA AQHQQHNQRA APPQPAPAQA DDASSRRCKK KSKKQTQLGC  120
SASICKLRDA SPRRVTLHRP PAEEEPPSGA ATGAGEPCKR RASVSGAGER RVKKPLQQPQ  180
QGQGNEAAGA VVVGSSSRHW GSSTASSSSS TAGGGGSSFR LRRLSGCYEC HMVVDPAGGG  240
TSMRAAIFPC PDCGDVFVRA ESLHLHQATR HAVSELGPED TSRNIIEIIF QSSWLKKQTP  300
VCAVDRILKV HNAPAXXXXX XXXXXXXXRP GRAGGAPAPA DAPPTATSCS ASTAPRSRAP  360
SARGAPPTSA TAPATPPAPR AGSFATGSSS GRPGSGPWPP AAARTTMPWP WVGRRGRAAE  420
ESSAGPCSCA GSSPGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRCKKKSKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162022.1	1e-148	uncharacterized protein LOC109747356
TrEMBL	A0A446LP84	1e-153	A0A446LP84_TRITD; Uncharacterized protein
STRING	Traes_2AL_1FB739291.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	8e-33	C2H2-like zinc finger protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]