PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_1D7D3D0DE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 107aa MW: 12110.8 Da PI: 9.0999 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.9e-16 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l + +++ Gg+ +W++ ++ g++R++k+c++rw +yl Traes_2AL_1D7D3D0DE.1 15 KGPWTEEEDKALMEHIQKRGGNvgSWRSLPKAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.7 | 1.1e-12 | 70 | 107 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rg++T +E+ l++ +++ lG++ W+tIa ++ gRt++++ Traes_2AL_1D7D3D0DE.1 70 RGNFTDDEERLIITLHASLGNK-WSTIATHLE-GRTDNEI 107 89********************.*********.*****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.625 | 10 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-26 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-7 | 17 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-19 | 68 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.405 | 69 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 0.018 | 69 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-10 | 70 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.12E-7 | 72 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MGRSPCCCRD AGVKKGPWTE EEDKALMEHI QKRGGNVGSW RSLPKAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTDDEERL IITLHASLGN KWSTIATHLE GRTDNEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 13 | 107 | 25 | 116 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 1e-103 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 1e-103 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 1e-103 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105856.1 | 7e-69 | transcription factor MYB2 | ||||
Swissprot | Q9S9Z2 | 1e-50 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3B6B5U3 | 3e-73 | A0A3B6B5U3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_1D7D3D0DE.1 | 2e-74 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-54 | myb domain protein 9 |
Publications ? help Back to Top | |||
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