PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_0F613C5AB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Nin-like | ||||||||
Protein Properties | Length: 938aa MW: 102044 Da PI: 6.0884 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88.4 | 5.9e-28 | 562 | 613 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i +++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ Traes_2AL_0F613C5AB.1 562 AEKNIGMDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 613 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 2.55E-5 | 207 | 284 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 16.54 | 547 | 633 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.6E-25 | 565 | 613 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 6.21E-23 | 831 | 919 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.1E-22 | 833 | 915 | No hit | No description |
SMART | SM00666 | 7.3E-18 | 836 | 918 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.763 | 836 | 918 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.2E-15 | 837 | 917 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 938 aa Download sequence Send to blast |
MDVPLPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH 60 QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAETGTG RMAKSSGDLG 120 SDGDPEQGST SLVPRPIAGN LLADRMLMAL SLFRKSLGGG ILAQVWMPVE QEGHVVLSTC 180 EQPFLLDQAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR 240 MEYALHHEVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF DAEMNNLRHA LQAVNLETAK 300 DCIDQKVYSA NQKAAFTEIL DVLRAICHAH MLPLALTWVP SSNGSDGGYV GHDSVLDSQS 360 GKAILRIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR ALKSNLPFFS PNIREYGIKD 420 YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC TGSEEQQMLL NNLSSTMQRI 480 CKSLRTVSEA EVDKVDACTA VMYKATSGSC LPTGQSWSSS HGDQPATEEA FQDLSLIDKQ 540 GDMSEQAQSS SMRLAEKKRS TAEKNIGMDV LRKYFSGSLK DAAKSLGVCP TTLKRICRTH 600 GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT GSLVPAVSLP EKTSFPSCDA 660 VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER DSCQLQRSDA QKGEGGEFHM QTTNYSGSGD 720 HGSYGPNITH HISSEGTQGP LYPTGAVSAL HDKETGCIEP LPCVLPSIKT TRDQIVGRNS 780 PPMQQADIDM FDDREGREHT HPSTSGMTDS SSGSASSHPT FKKNPARPLK DKSSPALTVK 840 ATYNGDTVRF KFLPSMGWYH LLEEIAKRFK LLTGVFQLKY KDDEDEWVIM ANDSDLQECV 900 DVMDSMGTRN VKLQVRDLPC LISSSGSSSC LQLEGHNS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150529.1 | 0.0 | protein NLP2-like | ||||
Swissprot | Q0JC27 | 0.0 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | A0A3B6B0L8 | 0.0 | A0A3B6B0L8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L845 | 0.0 | A0A446L845_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_0F613C5AB.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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