PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_0F613C5AB.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 938aa    MW: 102044 Da    PI: 6.0884
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_0F613C5AB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK88.45.9e-28562613152
                 RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            aek+i +++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++
  Traes_2AL_0F613C5AB.1 562 AEKNIGMDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 613
                            589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557812.55E-5207284IPR029016GAF domain-like
PROSITE profilePS5151916.54547633IPR003035RWP-RK domain
PfamPF020422.6E-25565613IPR003035RWP-RK domain
SuperFamilySSF542776.21E-23831919No hitNo description
Gene3DG3DSA:3.10.20.2401.1E-22833915No hitNo description
SMARTSM006667.3E-18836918IPR000270PB1 domain
PROSITE profilePS5174522.763836918IPR000270PB1 domain
PfamPF005642.2E-15837917IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MDVPLPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH  60
QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAETGTG RMAKSSGDLG  120
SDGDPEQGST SLVPRPIAGN LLADRMLMAL SLFRKSLGGG ILAQVWMPVE QEGHVVLSTC  180
EQPFLLDQAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR  240
MEYALHHEVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF DAEMNNLRHA LQAVNLETAK  300
DCIDQKVYSA NQKAAFTEIL DVLRAICHAH MLPLALTWVP SSNGSDGGYV GHDSVLDSQS  360
GKAILRIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR ALKSNLPFFS PNIREYGIKD  420
YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC TGSEEQQMLL NNLSSTMQRI  480
CKSLRTVSEA EVDKVDACTA VMYKATSGSC LPTGQSWSSS HGDQPATEEA FQDLSLIDKQ  540
GDMSEQAQSS SMRLAEKKRS TAEKNIGMDV LRKYFSGSLK DAAKSLGVCP TTLKRICRTH  600
GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT GSLVPAVSLP EKTSFPSCDA  660
VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER DSCQLQRSDA QKGEGGEFHM QTTNYSGSGD  720
HGSYGPNITH HISSEGTQGP LYPTGAVSAL HDKETGCIEP LPCVLPSIKT TRDQIVGRNS  780
PPMQQADIDM FDDREGREHT HPSTSGMTDS SSGSASSHPT FKKNPARPLK DKSSPALTVK  840
ATYNGDTVRF KFLPSMGWYH LLEEIAKRFK LLTGVFQLKY KDDEDEWVIM ANDSDLQECV  900
DVMDSMGTRN VKLQVRDLPC LISSSGSSSC LQLEGHNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150529.10.0protein NLP2-like
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A3B6B0L80.0A0A3B6B0L8_WHEAT; Uncharacterized protein
TrEMBLA0A446L8450.0A0A446L845_TRITD; Uncharacterized protein
STRINGTraes_2AL_0F613C5AB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]