PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_088338613.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 338aa    MW: 36457.7 Da    PI: 5.4407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_088338613.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11141185655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Traes_2AL_088338613.1 141 IVSERKRRFRMKEKLYELRALVPNI-----TKMDKASIIADAVAYVKNLQ 185
                            568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16132202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-13133185No hitNo description
PROSITE profilePS5088815.535135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEHHQRLLHL SPHQEHLMIG PGFFDVDPMH FHGDDAGFLA VQPAADDGAW MEDLMHLGDE  60
LFGGGGGGGG AGDDNDMVGA AAAADQAWRQ ECEGASPDDH PCSYDDVISP VSGEQGAGFE  120
PSRDDSDLSG TRKRRDRSKT IVSERKRRFR MKEKLYELRA LVPNITKMDK ASIIADAVAY  180
VKNLQSHARK LKEDVATLEA RPGLAGRRQQ LQQKQGRRHG RNGGDDEGNS GSSRGGGGAR  240
VTLVSAAQVG EGRFFVTVEC ERRDGVAAPL CAAVESLAGF LVESSNLGCS SDRVVSTLTL  300
KVSEAREEVM ISDRTVKLWV MAALLSEGFR PEATSEIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132147KRRDRSKTIVSERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152884.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3B6AZC60.0A0A3B6AZC6_WHEAT; Uncharacterized protein
STRINGTraes_2AL_088338613.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-38FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]