PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_01E6C08C0.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GATA | ||||||||
Protein Properties | Length: 441aa MW: 48058.9 Da PI: 7.5347 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 44.4 | 2.3e-14 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Traes_2AL_01E6C08C0.2 7 CCHCGVTSTPLWRNGPTHKPVLCNACGSRWRTKGS 41 99**************99999***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-8 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.61E-11 | 4 | 46 | No hit | No description |
CDD | cd00202 | 2.96E-14 | 6 | 52 | No hit | No description |
PROSITE profile | PS50114 | 11.464 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.4E-12 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.1E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MGKEGPCCHC GVTSTPLWRN GPTHKPVLCN ACGSRWRTKG SLENYTPMHS RDDIDADQPR 60 VSKLKPPTLR LKEQRQLKKR PSHSIRENGA FSDQNFWKMG DADPSRSSSG SALSYSESCA 120 PYGSADASEM TGSAQSHAWE SLVPSKKRSC VTRTKSSSVD MLVKDLHCIM HEEQLSYLSG 180 SSEEDLIYHS ATPVDSFEIG YGSMLLRSSN SKSAEEDSEA NSVPADNKSY LTSESYSGTA 240 SFVVHSESKG ASNSNASPEK PKWFPVHTHE IAKRGKLHYS KQHTLENVGS TLVSVALEGE 300 GTKETGGNEN TSALKDLTKS TMKPLKRPHE SQLQSCPEGT MRIAKKVCKS VAMAPQFKGS 360 FLPKSGGAPF NLLMLPPDKI SMLAPPQYMD NSDQDLLLEV PLNAREPEAE LLCQPFQLSS 420 VTRSSTSADV VADGEGRLKQ P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362581 | 0.0 | AK362581.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008F08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173115.1 | 0.0 | GATA transcription factor 26-like isoform X1 | ||||
TrEMBL | A0A3B6B3W9 | 0.0 | A0A3B6B3W9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_01E6C08C0.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-59 | GATA transcription factor 26 |
Publications ? help Back to Top | |||
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