PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_F70AAB507.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27870.5 Da    PI: 7.3252
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_F70AAB507.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.8e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           +rien++ rqvtfskR+ g++KKA EL vLCda+vav++fs+tg+ly+ys+
  Traes_1DS_F70AAB507.2  9 ERIENTTSRQVTFSKRKSGLFKKARELGVLCDAQVAVVLFSNTGRLYDYSN 59
                           69***********************************************95 PP
2K-box81.32.2e-2782171998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                             ++a+a+ +q e ++L+++++nLq+++R+llG+ L+ L l++++ Le+qLe+s+ +iR +K++l++++ieel kke  +++en +L+k
  Traes_1DS_F70AAB507.2  82 SASAEAKFWQAEGERLRQQLHNLQENHRQLLGQHLSGLGLEDMRGLESQLETSIHNIRLTKDQLMIDEIEELNKKESLVHQENIELHK 169
                            678899********************************************************************************** PP

                  K-box  97 kl 98 
                            kl
  Traes_1DS_F70AAB507.2 170 KL 171
                            98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.553161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-33160IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-25323IPR002100Transcription factor, MADS-box
CDDcd002651.56E-36379No hitNo description
SuperFamilySSF554557.85E-29383IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-253859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-2584171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.46287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVRGKTVIER IENTTSRQVT FSKRKSGLFK KARELGVLCD AQVAVVLFSN TGRLYDYSNC  60
NSGMKSIIER YQHVKEGQQF MSASAEAKFW QAEGERLRQQ LHNLQENHRQ LLGQHLSGLG  120
LEDMRGLESQ LETSIHNIRL TKDQLMIDEI EELNKKESLV HQENIELHKK LNIIRQENIY  180
LQNKLNGEAE VNGTITSSSS QYSTAAREDP VRLELSHPDH AERDEQPELP MLGLKVFTTR  240
TGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-14176174MEF2C
5f28_B5e-14176174MEF2C
5f28_C5e-14176174MEF2C
5f28_D5e-14176174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3714420.0AK371442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2134C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165066.11e-180MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP492e-79MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A3B5ZNC91e-179A0A3B5ZNC9_WHEAT; Uncharacterized protein
TrEMBLA0A452XQ411e-179A0A452XQ41_AEGTS; Uncharacterized protein
STRINGTraes_1DS_F70AAB507.21e-180(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-65AGAMOUS-like 16
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]