PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_EFCC1617E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 600aa    MW: 66472.9 Da    PI: 6.5229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_EFCC1617E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-18251341199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +  s+v +  +l +p +f++eh   ++ ++t++lede+g +++ ++  rk++    l++GW++F+  ++Lk+gD vvF+l++ +
  Traes_1DS_EFCC1617E.2 251 FVKLMQISHVVRVFWLGVPVSFCREHL--PNHDVTIVLEDEDGHRFDTNYLARKQG----LSGGWNRFATRHHLKVGDAVVFQLVEPT 332
                            88999999******************6..34789****************555555....9**********************98766 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  Traes_1DS_EFCC1617E.2 333 RF--KVYILRE 341
                            66..8988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-21245342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-23247341IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-26249340No hitNo description
PfamPF023621.0E-16251341IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437251342IPR003340B3 DNA binding domain
SMARTSM010195.7E-20251342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAIDEPAKSK RGAPAGDPHS AKSKTGQKMV HRRRPLLDEG SSSRNEDGDG DDDFEPMAMG  60
GTPAGYPPHS ARTKMGQKMS LAHRRLSLLD DGSSISRHIA AAAAAADDVG GGSEQMGEEF  120
AVDVAQKNTA VDDSDDPDGS EDDFVPLIMM RTKNVKSEPG KHPGLRYKHK TQRTINKTYK  180
RKKTGRSAGP VYAKRKVEKK PRLVGSNNIS KISDDDGQKK YASYSVLGFY ATAFDRALEV  240
EKKLPAEGPS FVKLMQISHV VRVFWLGVPV SFCREHLPNH DVTIVLEDED GHRFDTNYLA  300
RKQGLSGGWN RFATRHHLKV GDAVVFQLVE PTRFKVYILR ESKFSTTDGA LSLLSLDTSM  360
ENNMPEKGED TSDEDAKSRE DPEVTKVVTN KASDDDSNDL FSEAAANGGV GSPDPDPDFD  420
AVKTFRTFKM AIDSSVIDHK LVQDRLLWTY YKLCGDRKAF LHRRLPKHIN LTLAAGVIVE  480
TASIAEGIRS YPSSCSSCED LAAWKKTLES FELLGMDVGF IRERLDELLF LLDARSSDDH  540
PPEGYEEVKL ERARAAEKVR ALESKMASLK DALKDMEMEM EEIAEKRRGH ALLQLAAAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180040.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A3B5ZPH60.0A0A3B5ZPH6_WHEAT; Uncharacterized protein
STRINGTraes_1DS_EFCC1617E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-32B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]