PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_D4E92DDD4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 356aa    MW: 39815.8 Da    PI: 5.8756
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_D4E92DDD4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.6e-112613263499
                            SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EEEEE-S CS
                     B3  34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvvkvfrk 99 
                              +tl+   ++++W+ ++     ++ ++l+++W +Fv +n++++gD+++F   +g ++ +++v+++r+
  Traes_1DS_D4E92DDD4.1 261 GAVTLQMpGKSEKWRPRF--FIEKDNCMLAGNWLDFVCDNQVQAGDICIFVpAMGGERSTFTVHIIRA 326
                            345665534669******..66667799***********************54455888889*99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-15219326IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-15219327IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-13226325No hitNo description
PROSITE profilePS508639.911227327IPR003340B3 DNA binding domain
PfamPF023626.9E-9260326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLQLCSIAYM DHLDLPRGRI VDHEINYSVP RICHVSKDDF QFAAIADLHR QHFKFATFGI  60
LPFRDRTPYT DNPVTDTEVA EDDLRILSND QVLSGQWELV EVHEQKIDEL VKETQPEALG  120
FAEASIDHFR LGRTDISSNQ GTKKTASCER GSSSHCRNTA KAAVTPSSSE KSVEDSGREY  180
ESSESDDHPT PPEADYGVIF RSYLSGTQME SVNTLIHKIK PETIVFVATM RKSDVQLPTP  240
LLIISKERSL AAAARFPHEN GAVTLQMPGK SEKWRPRFFI EKDNCMLAGN WLDFVCDNQV  300
QAGDICIFVP AMGGERSTFT VHIIRAEATH RRGVKRVRSS HDSPVGVEGM TNPDAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201512.10.0uncharacterized protein LOC109787361
TrEMBLA0A3B5ZNQ90.0A0A3B5ZNQ9_WHEAT; Uncharacterized protein
STRINGTraes_1DS_D4E92DDD4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP492169
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]