PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_91D14CD7B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 309aa    MW: 34065.4 Da    PI: 6.5203
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_91D14CD7B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-092422742355
                            SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            +yp++e++ +LA+ +gL+ rq+ +WF N+R ++
  Traes_1DS_91D14CD7B.2 242 PYPTEEDKVRLAAMTGLDPRQINNWFVNQRKRH 274
                            8*****************************885 PP
2ELK34.44.7e-12194215122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            EL+++Ll+KYsg+L+ L++EF+
  Traes_1DS_91D14CD7B.2 194 ELREMLLNKYSGCLSHLRTEFL 215
                            9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-164589IPR005540KNOX1
PfamPF037901.8E-184785IPR005540KNOX1
SMARTSM012564.8E-2295146IPR005541KNOX2
PfamPF037912.4E-2199145IPR005541KNOX2
PROSITE profilePS5121310.039194214IPR005539ELK domain
PfamPF037898.3E-9194215IPR005539ELK domain
SMARTSM011883.5E-6194215IPR005539ELK domain
PROSITE profilePS5007112.406214277IPR001356Homeobox domain
SuperFamilySSF466891.11E-19216286IPR009057Homeodomain-like
SMARTSM003891.4E-12216281IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-25219279IPR009057Homeodomain-like
PfamPF059204.1E-16234273IPR008422Homeobox KN domain
CDDcd000862.75E-11240278No hitNo description
PROSITE patternPS000270252275IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEDLYSIHPG ISRRGEGGAA CSVASGIAGD ASSPPPPPSP ADLTELMKAQ IAGHRRYPSL  60
LSAYIECRKV GAPPEVASLL EEIGRPERRG GGAAAAGEIG LDPELDEFMV AYCRLLSRYK  120
EELSRPLDEA ASFLTTIRSQ FTKLCGGGAT ATSAKTETQF DEMVESSEDE PYSGDTGASD  180
AGMQEQSSRL ADRELREMLL NKYSGCLSHL RTEFLKKRKK GKLPKDARLA LVDWWNTHYR  240
WPYPTEEDKV RLAAMTGLDP RQINNWFVNQ RKRHWKPSED MRFALMEGVT GGGGGSSYDT  300
TLCFVHGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209218LRTEFLKKRK
2215219KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486000.0AK248600.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158428.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP291e-130KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A452XVJ60.0A0A452XVJ6_AEGTS; Uncharacterized protein
STRINGTraes_1DS_91D14CD7B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-71KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]