PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_5998ADCA3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 122aa MW: 14422.6 Da PI: 7.5054 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 103.8 | 2.4e-32 | 3 | 114 | 263 | 374 |
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 +ys +fd+l+a++pr++++r+++Er l+g ++ n++acega+r+er e++++W++r +aGF+++p+++ + k++ ++ + + +++ Traes_1DS_5998ADCA3.1 3 HYSPMFDMLDANVPRDNKARKMIERILFGMDALNIIACEGADRTERPESYRQWQARCLKAGFQQLPVDQAILKNIVHMKNSLYHEEFF 90 8**********************************************************************************999*9 PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 e++g+l++gWk+r L+++S W+ Traes_1DS_5998ADCA3.1 91 AVEDRGWLLQGWKGRVLYAISKWK 114 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.543 | 1 | 94 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-30 | 3 | 114 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MLHYSPMFDM LDANVPRDNK ARKMIERILF GMDALNIIAC EGADRTERPE SYRQWQARCL 60 KAGFQQLPVD QAILKNIVHM KNSLYHEEFF AVEDRGWLLQ GWKGRVLYAI SKWKPDETYD 120 NQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198294.1 | 2e-76 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3B5ZMX7 | 1e-87 | A0A3B5ZMX7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DS_5998ADCA3.1 | 2e-88 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 5e-39 | GRAS family protein |
Publications ? help Back to Top | |||
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