PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DS_55E91A134.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 655aa MW: 69841.4 Da PI: 9.6485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DS_55E91A134.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	485	531	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Traes_1DS_55E91A134.2 485 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 531 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.5E-20	479	538	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.019	481	530	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.16E-18	484	535	No hit	No description
SuperFamily	SSF47459	2.09E-20	484	559	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-14	485	531	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-17	487	536	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
PPDRDRWGDG QTVRQQTGRG LAARAPPLSI AVPAIYSTAR RAPPTSSSRC PSPTRAASLG 60 INGDASLGGA SLFLNCSPLT HAHRIQTALL RVGALLLLLH PSFPAAAAPL VTRDGKRGDK 120 IILRQPRRGV GRATPVAAGA GRSPSFIYPH RPGMSEPGNE LEELLWDNGP ALRRTASPFP 180 PFSCSAAGTM KAQELAKHPA SATAMAHGHD DDAVPWLQHY PIIGVDDDGS GGDTAPLPQE 240 YFSTLFPGFS DLPAAVASRD AGAPSTSHAA VVVPPLPEPP APPKQQQPPP RTTGEGVMNF 300 SFFSRPLQRS LPQASVRPSA AGNKSVESML LQTNRLRSTP LFSEQRTAWL HPPKESPATA 360 SASRPPAPPV PVRHAAEPAA ALPQRLQPEA RAAALPPRLQ PEVRAVALPQ RLQSEARASE 420 MPPPPATATT SSVCSDNGER SQLKRSSHQT LEWSVSQDDE DLDDEAGGLR RSAARSTKRG 480 RTAEVHNMSE RRRRDRINEK MRALQELIPN CNKIDKASML EEAIEYLKTL QLQVQMMSTM 540 GTAGLCMPPM MAMQHMQMPP MAHFHHHHLG AMGFGMGAFD PRLVAAAGAA QFPYPMMPGA 600 PMFGAHAMPP PPPFHQAAVA GAHMAAGPVT NDAATAAQAE HEQTPGDHPQ VPRAM

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

PPDRDRWGDG QTVRQQTGRG LAARAPPLSI AVPAIYSTAR RAPPTSSSRC PSPTRAASLG  60
INGDASLGGA SLFLNCSPLT HAHRIQTALL RVGALLLLLH PSFPAAAAPL VTRDGKRGDK  120
IILRQPRRGV GRATPVAAGA GRSPSFIYPH RPGMSEPGNE LEELLWDNGP ALRRTASPFP  180
PFSCSAAGTM KAQELAKHPA SATAMAHGHD DDAVPWLQHY PIIGVDDDGS GGDTAPLPQE  240
YFSTLFPGFS DLPAAVASRD AGAPSTSHAA VVVPPLPEPP APPKQQQPPP RTTGEGVMNF  300
SFFSRPLQRS LPQASVRPSA AGNKSVESML LQTNRLRSTP LFSEQRTAWL HPPKESPATA  360
SASRPPAPPV PVRHAAEPAA ALPQRLQPEA RAAALPPRLQ PEVRAVALPQ RLQSEARASE  420
MPPPPATATT SSVCSDNGER SQLKRSSHQT LEWSVSQDDE DLDDEAGGLR RSAARSTKRG  480
RTAEVHNMSE RRRRDRINEK MRALQELIPN CNKIDKASML EEAIEYLKTL QLQVQMMSTM  540
GTAGLCMPPM MAMQHMQMPP MAHFHHHHLG AMGFGMGAFD PRLVAAAGAA QFPYPMMPGA  600
PMFGAHAMPP PPPFHQAAVA GAHMAAGPVT NDAATAAQAE HEQTPGDHPQ VPRAM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	494	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269\|PubMed:22363621}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359700	0.0	AK359700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164967.1	0.0	transcription factor APG-like
Swissprot	Q6AT90	1e-76	APG_ORYSJ; Transcription factor APG
TrEMBL	A0A3B5ZQ70	0.0	A0A3B5ZQ70_WHEAT; Uncharacterized protein
STRING	Traes_1DS_55E91A134.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-30	phytochrome interacting factor 3

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]