PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_543CC7DC9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 306aa MW: 33144.3 Da PI: 5.4526 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 237 | 270 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ Traes_1DS_543CC7DC9.1 237 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 270 59*****************************885 PP | |||||||
2 | ELK | 33.1 | 1.2e-11 | 190 | 211 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Traes_1DS_543CC7DC9.1 190 ELKEMLLKKYSGCLSRLRSEFL 211 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.2E-19 | 45 | 89 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.4E-20 | 47 | 85 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.4E-23 | 95 | 146 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.0E-22 | 99 | 145 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.4E-8 | 190 | 211 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 190 | 211 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 190 | 210 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.519 | 210 | 273 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-14 | 212 | 277 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-20 | 212 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 215 | 275 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.93E-13 | 222 | 274 | No hit | No description |
Pfam | PF05920 | 5.1E-17 | 230 | 269 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 248 | 271 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEDLYSIHPG ISRGGEGGAA CSEASGVAGG ASSPPPPPPP ADLTELMKAQ IAGHPRYPSL 60 LSAYIECRKV GAPPEVAALL EEIGQPERRG GGATAAGEIG LDPELDEFMV AYCRLLSRYK 120 EELSRPLDEA ASFLTTIRSQ LTNLCGGGTT ATSPHSDEMV GSSEDEPCSG DADGSDAGMQ 180 EHSSRLADHE LKEMLLKKYS GCLSRLRSEF LKKRKKGKLP KDARLALMDW WNTHYRWPYP 240 TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGGG SSSGTTLYFD 300 TGTIGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 214 | LRSEFLKKRK |
2 | 211 | 215 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB465042 | 0.0 | AB465042.1 Triticum aestivum WLG4 mRNA for KN1-type homeobox transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178258.1 | 0.0 | homeobox protein knotted-1-like 10 | ||||
Swissprot | Q9FP29 | 1e-149 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A452XVJ4 | 0.0 | A0A452XVJ4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1DS_543CC7DC9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-79 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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