PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1DS_300AB5CC9.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1670aa MW: 179590 Da PI: 6.5319 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.3e-09 | 712 | 754 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE e + + + +G++ +++I++ ++ ++t +c+++++k+ Traes_1DS_300AB5CC9.2 712 PWTHEEKEVFMQMLASFGKN-FSKISNFLQ-HKTTADCVEFYYKH 754 8*****************99.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-14 | 695 | 757 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.727 | 708 | 759 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 709 | 757 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-6 | 711 | 754 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-7 | 711 | 756 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.846 | 919 | 970 | IPR017884 | SANT domain |
SMART | SM00717 | 6.9E-5 | 920 | 968 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-8 | 923 | 965 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.22E-4 | 924 | 962 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1670 aa Download sequence Send to blast |
PLXPDEPLGY TPSRSDRYWL EEDPPAGYKG FSRYGGGGGR RDGRDLRGSY RRSPFRSYGG 60 DFPRGHQEPP PPPPLRRSPL RSVAVPICYD PPSDRADRED KEHQPRATPW RPLRRRESRS 120 DAADAAGAGP LSARQSATAG AASEKNAPSQ SAAVADSQSA EEETPRKKPR LGWGQGLAKY 180 EKQKVPGSSE SAEPVAEGSP GGVEQKEVEG APAPALCASP VAAPAAQPSA PALCASPVAA 240 PAAPSAPPSS SPVPEDKSCE LTTNTVTVSN KDIPGAEVQA YNDEIPIKLG QLDGDRIGSL 300 ANVLAELLQH EDSCSGDSRR LTNSSKLLLL KENIARELEK TELEIDSLEC ELKSVSTESE 360 NKALEDAQNP SPSSGTSKIL AKPATSKVLA KPETSKVLAK PEICGTSSSP KEQGVLTPCK 420 LSVEQEADAN GVDLMDVVTA PVRGVTAVSS GESVACPGVV AEAQVAVAAD VAPLKPSEGT 480 GSQIDAHCPR QEPSLSHDNV SSMKADGSNA LSTRQCSHHN DNRNLIPSII AVNNDIAKEF 540 NELVFKPLPA GQPCLGLSSQ MKNDLSVRKK LCMHKNRLRF KEQALTFKFK VLRHLWKEDV 600 RLLSVRKQRP KSNKRTDQSN RASQSGSQRQ RSSNRSRLGM PAGNLSTFPT TEISDVANKM 660 FTEFQFKRCR NYLKMPALII DEKEKESASF VSKNGLIEDP VSVEKERSVI NPWTHEEKEV 720 FMQMLASFGK NFSKISNFLQ HKTTADCVEF YYKHHKSDSF REVKKLLDLR QQQPTGNYLG 780 TKSGKKWNPE NAASLDMLGN AASVVAAHGL DYANRVEKDT EKSIIRTSCR SDVSAVAKGS 840 LDKDGIANVS LHERESVAAD VLAGICGTLS PEGMGSCITS SADHGQKIGA TRMEYLIATP 900 EADKSFDEED DLSDQECEVD SVDWNDNEKS LFIEALNNHG KDFARISSYV KSKSYEQCKV 960 FFSKARISLG LDLIYQQTTD TGLPTGDASG GRSDTDEACA AEMDSPICST QSPVEMEMEV 1020 CPSADKTLQG HLLSGITFKQ SETDRSDGPD IVDLTFEEGE IKAEDTNNCN IPVHHGQSSE 1080 ATHQSTPSCA PIDINSSEST GSMENREHSN QVSVHGNGAM ASSTEQSVGA HLEISSSLHN 1140 VEVIEPSKAS EKICTQVSSR EHAPESCAPS SAGNLTTPVF LPGVIQSSNV YEGICTKESS 1200 VERPSQQAPL SAHMKAGNLT LSVCLPGEQS SKVSSIEGPS KHAPESVHVK AGNLAPSVCL 1260 PGESGSKENV AHFPDMAGVS CIRPAFTSSY QQSVPTDLLP AKPKSQVTPL TPKDLMPVQF 1320 SSDLPDPTSI RFEGIASITS PNFGDHANRV SNTPGPKDMN KFPVFNEQSR SQHDVLFRNI 1380 DGYLQHRQNH HLAVDIPAFS DSTVSGSVGI SHPDQFTITK YQNGRSGSSG LSSSSAGFLM 1440 NGSSKELREG QLKPCSHKAS TESCDQVKRP GDVKLFGKIL SHQSSLQSSG SSSNATRSKP 1500 PPPTTAAGLL GSGMDRMVYS SRPTNTAHIG QDERVVRSYT HLDGSTAQPE SSLFRVAKCQ 1560 RSSLASVPFY SAKNGTLGVF AEYQQPLRQQ LPSDPKRLES YADLQKRNGM ELISGFQQQQ 1620 QPGKAARLGG AGILVSPVSD PVAALKAQYG SSSKFLGKDA DHPWKDIGNR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 1e-15 | 670 | 761 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 1e-15 | 670 | 761 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148930.1 | 0.0 | uncharacterized protein LOC109734119 | ||||
TrEMBL | A0A3B5ZQX9 | 0.0 | A0A3B5ZQX9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DS_300AB5CC9.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52250.1 | 5e-70 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|