PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_2BB06F54C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 511aa MW: 55674.9 Da PI: 7.1076 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 182 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Traes_1DS_2BB06F54C.1 182 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 231 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.3 | 8.1e-13 | 274 | 324 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g Traes_1DS_2BB06F54C.1 274 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 324 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.41E-16 | 182 | 240 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 182 | 231 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.73E-11 | 183 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-17 | 183 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 183 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 183 | 245 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-8 | 274 | 324 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.02E-24 | 274 | 334 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-16 | 274 | 333 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.277 | 275 | 332 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 275 | 332 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 275 | 338 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 276 | 287 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 314 | 334 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF 60 SILRSSASAE GENDVGADDD EEEATPSPPP PPPRHYHQHL LQPQQLVTQE LFPAAAAAGG 120 PPPMPVPQHW AELGFFRPAA PPPDMRILQL QQQQAHAPPP PPPPAQPPVA KKSRRGPRSR 180 SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL 240 SDYEDDMKQM KGLSKEEFVH VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI 300 YLGLFDNEVE AARAYDKAAI KCNGREAVTN FEPSTYDAEL LNEVAAEGAD VDLNLSISQP 360 TSQSPKRDKS SLGLQLHHGS YEGSELKRPK VDAPPEMVAI PHRYPLLTEH PPIWHGQSYP 420 LFLNNEEAAR DHSRRPEVAT GAVPTWAWRV SHPPPTQPMP LFSSSSSAAA SSGFSKTAAA 480 AAPGAPSASF RFDPMAPSSS SSNQHHHHHP R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX473823 | 0.0 | JX473823.2 Triticum aestivum cultivar Zhoumai 18 starch negative regulator RSR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170161.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 0.0 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A3B5ZQJ5 | 0.0 | A0A3B5ZQJ5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DS_2BB06F54C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-101 | related to AP2.7 |
Publications ? help Back to Top | |||
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