PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_0CFC1995D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 339aa    MW: 37114 Da    PI: 7.0133
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_0CFC1995D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-104885539
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39
                           k  rr+++NReAArrsR+RKka++++Le    + ++Le
  Traes_1DS_0CFC1995D.2 48 KTLRRLAQNREAARRSRLRKKAYVQHLESsglRLAQLE 85
                           6679************************7333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-844107IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.764690IPR004827Basic-leucine zipper domain
PfamPF001708.4E-84886IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.01E-74890No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-84892No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141441.2E-26130211IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDCPSPGGTD TSTDPDLDKN QAFEQGHAAA GLTPPDSSDK SIGELGPKTL RRLAQNREAA  60
RRSRLRKKAY VQHLESSGLR LAQLEQELQR ARQQGFLVST LGDQPDSENG NAASSFYVEY  120
ARWLEEHHKQ VDELRAAVSA HAGDGDLQSI VDTIMARSDE IFRLKGAAAK GAAAKADAFR  180
VISGTWMTPV ERCFLWLGGF RPSELLKLLA SRLEPLTEKQ LDSIDVLRRS SLQAEEALCR  240
EMEALRRSVT EAVAAAGSSS LSCSDADCTG QMAVAVGKLG VMEGLLRQAD DLRLRILEET  300
RRVLTTRQCA RAVLVVTDYF SRMRALSSLW IARPTTGVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066RRSRLRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175059.10.0transcription factor TGA2.3-like
SwissprotQ415581e-140HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A3B5ZS040.0A0A3B5ZS04_WHEAT; Uncharacterized protein
STRINGTraes_1DS_0CFC1995D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2086457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-107bZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]