PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_F9E8D5568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 721aa MW: 82554.6 Da PI: 6.1949 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.6 | 7.4e-12 | 113 | 194 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y+++A GF + + + +k + C+++ k +++++ +++r+ ++++ +C+a+ +vk +g+we t++++eHnH+l Traes_1DL_F9E8D5568.1 113 YYSAHALLSGFVAIRGPNFMR------KKFHVECNRSRKLAPSQDL-KRKREVYSVNKAQCEARAVVKPV-KGQWEFTSVRSEHNHPL 192 8999*******9999988777......456799*********9988.99999****************99.9**************** PP FAR1 90 ap 91 +p Traes_1DL_F9E8D5568.1 193 CP 194 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-10 | 113 | 194 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.2E-29 | 315 | 408 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.025 | 598 | 634 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.8E-4 | 605 | 626 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0074 | 609 | 636 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MDGYTIISSD QEQPVIGADW SSGALSDELE IHANSADLSL QLAEEQSQLH DILGINEMPI 60 NDTGSASDSD GSSGNETDKE PGKYFYPGFD ELVDPRPPEV GMRFPTLEDA TRYYSAHALL 120 SGFVAIRGPN FMRKKFHVEC NRSRKLAPSQ DLKRKREVYS VNKAQCEARA VVKPVKGQWE 180 FTSVRSEHNH PLCPSPSLTK FFLSCKHMSA EEKSFLRALQ QSSIHPKKAM KIFKRMRGIL 240 GSLPFNTKDA NTSQCAEQQG KPNSDVETTV KHLKELELQN PCVSITMQTD EDSIVRSLFW 300 TDARSRLDYE IFGDVLSFDT TYSTISHNML FTSISGMNEH GRTLVFGYAL LQDRKAETFK 360 WMFQTFFHVM GRKMPRAIIT DQDEAIAKAI SEVMPQVKHR FCKFHVMRKA REMLGGFIAA 420 RGNISSELRA LVNNSLTEAE FEEGWAALIE MYSASENEYL QLLWETRKEW VPVYFREDFY 480 PFVETTGCCE GANSLFKDYV LPKDRIEKFL ERYEDVQERI METDDEDRLQ SRTEPSCFSM 540 QPIEKHAARI YTRQIFLKVQ RELLHSTAFN VQEIQTGTVY RLEKVSAYEN PEFDRNSFEL 600 LVEPSTNAIK CECAKFTRDG IPCCHIFRLF TQFGVNEIPG QYIAPRWTAK FKEEQMKQYR 660 EKCLDSRGMD QSENSMRYAM LLSKVADIGK EICGDGSKCD KFRLELDTIQ GKTGKGGIKN 720 T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 6e-77 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165335.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A452ZIF7 | 0.0 | A0A452ZIF7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1DL_F9E8D5568.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-77 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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