PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_EED669F6A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 362aa    MW: 41531.7 Da    PI: 6.5307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_EED669F6A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07213255145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            r +WT+ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  Traes_1DL_EED669F6A.1 213 RAKWTKSDTDLFYQGLQQFGSD-FAMIQQLFP-DKSRDQVRQKFK 255
                            569*******************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.58E-10205260IPR009057Homeodomain-like
PfamPF159631.8E-24206286No hitNo description
Gene3DG3DSA:1.10.10.601.7E-4210256IPR009057Homeodomain-like
PROSITE profilePS5129310.322211262IPR017884SANT domain
SMARTSM007172.0E-7212260IPR001005SANT/Myb domain
CDDcd001673.21E-5215255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKLRSRTEIQ KVGLSEHIVD DHLDEDFVEP SAAEQNNDSG DENTAGGKQK APRKSRKKDP  60
NKEPLRGSKR TSTKSTSEKS QPNQQKNKSE VSSRGRKRAL KDTMTEQPEK KLTHRIRQKR  120
AQEVQTLLQK PDHEIDRMKL SVTHLRLLQE ARERIQSKTP SGPSSSNQSS SRFGDTDDFD  180
PFGDNYDNDR TENQALENAT KLNYHSYMDK KTRAKWTKSD TDLFYQGLQQ FGSDFAMIQQ  240
LFPDKSRDQV RQKFKSEDKK HPMQVHDAIL HRSRDNLYLK QVMKQLNIED SLKDINITQK  300
QEVAPTEGNT GNDVISETNT FSVENVSNLS DEEMGTHQSE VKEGEDVAGN ADDVDLDVFD  360
WY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3713370.0AK371337.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182802.10.0uncharacterized protein LOC109768495 isoform X1
RefseqXP_020182803.10.0uncharacterized protein LOC109768495 isoform X1
TrEMBLA0A3B5ZXX50.0A0A3B5ZXX5_WHEAT; Uncharacterized protein
TrEMBLM8BNJ20.0M8BNJ2_AEGTA; Transcription factor TFIIIB component B
STRINGEMT235190.0(Aegilops tauschii)
STRINGTraes_1DL_EED669F6A.10.0(Triticum aestivum)
STRINGTraes_1DL_EED669F6A1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-27MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]