PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_DD0FCDF93.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 700aa    MW: 82020.1 Da    PI: 8.1916
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_DD0FCDF93.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.11.9e-2510104191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrk + +  + n++i+ r++vCs+eg ree++ k   ++++r++r+ tr+gCkak+++ +   +g+w v+++  e
  Traes_1DL_DD0FCDF93.1  10 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGRWFVKDFIDE 97 
                            6*****************************************99988777889999***************99988************ PP

                   FAR1  85 HnHelap 91 
                            HnH+lap
  Traes_1DL_DD0FCDF93.1  98 HNHPLAP 104
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2310104IPR004330FAR1 DNA binding domain
PfamPF105512.7E-36225319IPR018289MULE transposase domain
PROSITE profilePS509669.396503542IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MFHSEDEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSREGCR EEKHMKRKRE  60
DRKRKPRNIT RVGCKAKFVI ARVAKTGRWF VKDFIDEHNH PLAPRDLACF LRSHRRISDE  120
QKADIIEMES VGIRKHKIMD VLCMQYGGYD HVGCMTRDIY NFCHRYKQET VAAGDAQTVI  180
CHMMARQERD PDYFFKYLVD KDGHLKGLFW SDTQSRLDYE AFGDVVVFDS TYRTNKYNLP  240
FVPFVGLNHH RSTVIFGCGI ISHETNEAYE WMLRTFSEAM SQKHPISVIT DGDLAMQRAI  300
RVVWPDSYHR LCVWHIQQNI VRHLHDDEVR EEFRSFIYDS SSIEEHERKW IEFLRRNEVT  360
SEESWLHQMY QMRKLWCAPY LVGRCFLGLS SNQQSESLNS VLHTHLEGKM TLFDMLEHYE  420
RCLSGRRLNE AILDIVALQS VPLTDADASS LEKHAARVFT PCMFQLVRWS ISVVSKCVIN  480
EILDAWELTT YVVAKIDRRE KNSEVRCEMK EGSLYRISCS CRKLECLGTP CSHIFYILGI  540
RQVELLPRCC VPMRWTMSAK SAFPPTRKSE MYDYSASLVR YHELWNLSHA ACFRACQSSE  600
EYQHLKMVLS EQDGSKESSR GEEECIRFGP VLPQTMEIDC GDLEKVLDPV HVQGRGAPKK  660
RLQAKMKKQR SKRKCGYCGV EGHNRRKCNK LKEEMMAANC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15764KREDRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150962.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452ZGZ60.0A0A452ZGZ6_AEGTS; Uncharacterized protein
STRINGTraes_1DL_DD0FCDF93.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-90FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]