PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_D79FDE483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 65aa MW: 8128.41 Da PI: 5.8642 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.3 | 2.4e-22 | 2 | 65 | 3 | 67 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkk 67 pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+k Traes_1DL_D79FDE483.1 2 PGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRK 65 9***************************.89***************7777899*********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.826 | 1 | 65 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-11 | 2 | 63 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-24 | 2 | 65 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MPGFRFHPTE EELIEFYLRR KVEGRRFNVE LITFLDLYRF DPWELPAMAV IGEKEWFFYV 60 PRDRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-23 | 2 | 65 | 17 | 80 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102902 | 3e-73 | AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637953.1 | 7e-44 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 2e-41 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A0D9ZZ99 | 1e-42 | A0A0D9ZZ99_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0DRG7 | 1e-42 | A0A0E0DRG7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HEK3 | 2e-42 | A0A0E0HEK3_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PML5 | 1e-42 | A0A0E0PML5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y4R5 | 2e-42 | A2Y4R5_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PVQ1 | 1e-42 | I1PVQ1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0DI41 | 2e-42 | Q0DI41_ORYSJ; Os05g0418800 protein | ||||
STRING | OGLUM05G17770.1 | 2e-43 | (Oryza glumipatula) | ||||
STRING | OMERI05G13800.1 | 3e-43 | (Oryza meridionalis) | ||||
STRING | ORUFI05G17970.1 | 2e-43 | (Oryza rufipogon) | ||||
STRING | ONIVA05G17420.1 | 3e-43 | (Oryza nivara) | ||||
STRING | ORGLA05G0144900.1 | 2e-43 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29571 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 9e-44 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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