PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_C0569EACC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 61aa    MW: 7211.92 Da    PI: 6.6109
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_C0569EACC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.31.2e-082561137
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37
                           +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs+
  Traes_1DL_C0569EACC.1 25 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSR 61
                           6**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-62561IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
ASDXSMFEYL NVVSKMFDSE AEGYEFYNKY ALEKGFSVRK SYVEWDGSNK YIILRKIVCS  60
R
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-89HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188780.12e-34protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452XR333e-35A0A452XR33_AEGTS; Uncharacterized protein
STRINGTraes_1DS_E5423261A.16e-36(Triticum aestivum)
STRINGTraes_3AS_9B4FF6282.16e-36(Triticum aestivum)
STRINGTraes_5BS_E5423261A.16e-36(Triticum aestivum)
STRINGTraes_6DL_E5423261A.16e-36(Triticum aestivum)
STRINGTraes_6DL_E5423261A1.16e-36(Triticum aestivum)
STRINGTraes_7DL_E5423261A.16e-36(Triticum aestivum)
STRINGTraes_7DL_E5423261A1.16e-36(Triticum aestivum)
STRINGTraes_7DL_E5423261A2.16e-36(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]