PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_B7E76AFE6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 662aa    MW: 74670.8 Da    PI: 8.937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_B7E76AFE6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07477516339
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                             W +eE ell +a +++++g   +W+ Ia+ +g+gR+  +
  Traes_1DL_B7E76AFE6.1 477 EWGKEEVELLRKATQKYPKGtnkRWEVIAEFIGTGRSVDE 516
                            7**********************************99765 PP
2Myb_DNA-binding22.13.5e-07605648243
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                            ++W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Traes_1DL_B7E76AFE6.1 605 DAWSEAQVLALVQALKAFPKDanqRWERVAAAVP-GKTVVQCKKK 648
                            58********************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.0E-2094199IPR001623DnaJ domain
SuperFamilySSF465653.01E-1995176IPR001623DnaJ domain
SMARTSM002719.2E-1597172IPR001623DnaJ domain
CDDcd062573.38E-1398169IPR001623DnaJ domain
PROSITE profilePS5007617.80198180IPR001623DnaJ domain
PfamPF002261.9E-1798177IPR001623DnaJ domain
PRINTSPR006253.2E-8103121IPR001623DnaJ domain
PRINTSPR006253.2E-8121136IPR001623DnaJ domain
PRINTSPR006253.2E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.3E-5470517IPR009057Homeodomain-like
PROSITE profilePS500906.365470513IPR017877Myb-like domain
SMARTSM007175.7E-6474527IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-7474518IPR009057Homeodomain-like
PfamPF002491.8E-5476517IPR001005SANT/Myb domain
SMARTSM007172.4E-6603655IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-8604651IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-4606650IPR009057Homeodomain-like
PfamPF002491.1E-5606648IPR001005SANT/Myb domain
CDDcd001673.13E-5606648No hitNo description
PROSITE profilePS500906.156607653IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MGSKRTCLLI TYYPEIVDGV PLYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDTE  60
TDDRSVSSDD KSQDFSAGSD NFSSKGKKKS GSGSQQQDHY ALLGLGNLRF LATEDQIRKS  120
YRDMALKHHP DKQAALLLHE TTEAAKQAKK DEIESHFKAI QEAYEVLMDS TKRRIFDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VTQPIPSLGD DATPVVDVDQ FYNFWYNFKS  240
WREFPHEDEY DLEQAESREH KRWMERQNAK IQEKAKKVEY TRVRNLVDNA YRKDPRIQRR  300
KEQEKAEKQR RKEAKYMAKK LQEEEAARAA EEERKRKEEE AKIAAAAADI RKKLKEKEKK  360
LLRKEKNRLR TLVGQVVGES HFNLSKEDVE TVCTSHDFEQ LKKLCDIMED KDTAEKARLL  420
RGALSKEENS SNTSKEEKIH ANGVADSTPK STVPQGTPKS TAPQVITLGN NEKKEKEWGK  480
EEVELLRKAT QKYPKGTNKR WEVIAEFIGT GRSVDEILKA TKTVLLQKPD SSKAFNSFLE  540
KRKAAPSIVS PLSTRDETAG GSTVGAGTEP SKAAEQPAAS SSQTANEKTG ADPVPEEAPS  600
ATDPDAWSEA QVLALVQALK AFPKDANQRW ERVAAAVPGK TVVQCKKKVT SMRTNFRTKK  660
AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1819429820124Zuotin
5dje_B1e-1819429820124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333354RKRKEEEAKIAAAAADIRKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178667.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178668.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178669.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A3B6A3D90.0A0A3B6A3D9_WHEAT; Uncharacterized protein
STRINGTraes_1DL_B7E76AFE6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]