PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_B26A733D4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 548aa MW: 61373.1 Da PI: 7.6748 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.2e-17 | 15 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk++a+ ++ Rt+ qc +rwqk+l Traes_1DL_B26A733D4.1 15 KGGWTPEEDETLRKAVAVFKGKNWKRVAQFFP-DRTEVQCLHRWQKVL 61 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.1e-18 | 67 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +++ vk++G+ W+ Iar + gR +kqc++rw+++l Traes_1DL_B26A733D4.1 67 KGPWTQEEDETIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 113 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 59.8 | 6e-19 | 119 | 161 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ Traes_1DL_B26A733D4.1 119 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 161 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.635 | 10 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-19 | 13 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 15 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 17 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-13 | 18 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.114 | 62 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-30 | 64 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-16 | 66 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 67 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-14 | 69 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 74 | 116 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 117 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 118 | 166 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.338 | 118 | 168 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.8E-17 | 119 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-13 | 121 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
SYSIRRISGP VRRAKGGWTP EEDETLRKAV AVFKGKNWKR VAQFFPDRTE VQCLHRWQKV 60 LDPELIKGPW TQEEDETIIQ KVKEHGPTKW SVIARSLHGR IGKQCRERWH NHLDPQIRKE 120 AWTFEEEQVL VDAHRMHGNK WAEIAKLLPG RTDNSIKNHW NSSVRKRLDE YDTGAAHPVP 180 VHVSHNDLKQ VAMALPSENY IDLNKEPNIS LRNHSVIVDH SVPTHSPRVC SLKNIMGCSD 240 FLSLSMPTAQ PVTSCQASVP DDSAVALTIM GMKMDSVRDK DMELNFVRQK GLQINLSNEK 300 GLEIDPVTAN PDGRESTLVK EAQSFGSLCY QIPKLEDIDL VRSPVLSRHH GSEHGVDGFQ 360 SPTGYATPSP TDGKQSDQLS VESILKSAAE NFPVTPSILR RRKRDKPTPS QDTDFKIDAN 420 SDGFDTPKAN CATYSPNSFK TASFLSLGRL DDQQLPSVLG KFDVSPTYRL RSKRMAVLKT 480 VEKHLDFSAD AMDTCDMVGT LKSSCRNTES VNASSDISSA HDRRINGHMI GLETLTSDFA 540 HTTQLDAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-67 | 14 | 168 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-67 | 14 | 168 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 406 | RRRKRDKP |
2 | 400 | 405 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363512 | 0.0 | AK363512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147038.1 | 0.0 | uncharacterized protein LOC109732249 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A3B5ZYL6 | 0.0 | A0A3B5ZYL6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DL_B26A733D4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 9e-97 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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