PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_A20157EC5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 98aa    MW: 10922.2 Da    PI: 6.3443
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_A20157EC5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-09549445
                           S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           WT+   +l+ +a + +  +   +W+ Iar +g g+++ ++++++ 
  Traes_1DL_A20157EC5.2  5 WTPKQNKLFEQALAVHDRDtpdRWHNIARAVGGGKSADDVRHYYE 49
                           *****************99************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.517156IPR017884SANT domain
SMARTSM007179.6E-7154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-4549IPR009057Homeodomain-like
PfamPF002498.4E-7549IPR001005SANT/Myb domain
SuperFamilySSF466892.56E-11559IPR009057Homeodomain-like
CDDcd001671.68E-6552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSVGWTPKQN KLFEQALAVH DRDTPDRWHN IARAVGGGKS ADDVRHYYEL LVHDIARIEA  60
GKVPFPAYRP PCPGPGHNGS YEVEALEDLG GNRVMDKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-245691174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519251e-92JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154620.15e-56protein RADIALIS-like 3
SwissprotQ6NNN01e-25RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A446KDD77e-58A0A446KDD7_TRITD; Uncharacterized protein
STRINGTraes_1DL_A20157EC5.25e-68(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-27RAD-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]