PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_918A8F357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33465.7 Da PI: 6.965 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8.2e-17 | 31 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++v+q+G g W+ a++++ R +kqc++rw+++l Traes_1DL_918A8F357.1 31 KGQWTPEEDRKLVKLVEQFGLGKWSQMAQMLP-VRVGKQCRERWHNHL 77 799*****************************.9************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 83 | 125 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ Traes_1DL_918A8F357.1 83 KDTWSEEEDMVLIQTHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 125 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.482 | 26 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.6E-31 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 30 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 32 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.0E-19 | 34 | 92 | No hit | No description |
CDD | cd00167 | 3.25E-14 | 34 | 77 | No hit | No description |
SMART | SM00717 | 2.5E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.287 | 82 | 132 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 85 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.60E-12 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGSYKTYEMS GRFIPRRKAS SKAVKKTNVV KGQWTPEEDR KLVKLVEQFG LGKWSQMAQM 60 LPVRVGKQCR ERWHNHLRPN IKKDTWSEEE DMVLIQTHKE VGNKWAEIAK RLPGRTENSI 120 KNHWNATKRR QFARRQTGTK AKNPKSGTLL QNYIKSLGIG SSKVIAPLDP KEPPLSAFSP 180 APPTQNRAHM NDNWPESNPS NIMVTQGIFS TDDRQIHSCE EILVPTSDDF SVDMFDGLFN 240 AEEVQYQAYN IDDDVDMDYI INHIDYSIKN DHEIDMDMTW DDDALVNIES G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-43 | 29 | 132 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-43 | 29 | 132 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-43 | 29 | 132 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196295.1 | 0.0 | transcription factor MYB46-like | ||||
TrEMBL | A0A3B6A1U3 | 0.0 | A0A3B6A1U3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DL_918A8F357.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-69 | myb domain protein 98 |
Publications ? help Back to Top | |||
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