PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_7AB06DF09.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 747aa    MW: 85730 Da    PI: 6.9219
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_7AB06DF09.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.63.1e-16145226191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+++A  +GF vr+ +++++      +k ++ C+++gk +++++   k++r+++     C+ak+ vk++ +++we + +++eHnH+
  Traes_1DL_7AB06DF09.1 145 RFYSTHAMLTGFAVRRGSNYRR------VKFDLECNRSGKLKPTEDL--KRKRRSNALGSRCQAKVIVKLH-NEQWEFIGVKHEHNHP 223
                            5********************9......7889***********9988..555555566789*********9.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_1DL_7AB06DF09.1 224 LCP 226
                            *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-14145226IPR004330FAR1 DNA binding domain
PfamPF105511.3E-29349441IPR018289MULE transposase domain
PROSITE profilePS509668.63629665IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MPYLDQAVEP NHPGAELRLE KDNVGEQATP GGGLQLTGGN GQEHASNGIG TAVQGLLADI  60
SDKQSNSMDT RMQKHAEEQD QLHGVTQGHE MSSNDTSSGS DSGSSSGSEL DTELGKCFYP  120
SFEELENSRP PEIGMRFPTL EDAERFYSTH AMLTGFAVRR GSNYRRVKFD LECNRSGKLK  180
PTEDLKRKRR SNALGSRCQA KVIVKLHNEQ WEFIGVKHEH NHPLCPSPSL ASFFLNHKYL  240
SSEEKLFLRV LQQSRVNPRK AMNIFRRMRS NFGKVSSIKE KDTSNSQCVN QWRKENSDVE  300
TALKRFKELE LRNLGFSYTM QKDEDNIVRS LFWTDARSKV DYEIFGDFIS FNTTYSTNKH  360
NMPFTPIIGM NSHGRILVFG CALLQDQKAE TFKWMFQTFL HVMGGKLPRI VITDQDEGMA  420
TAISEVMPQV RHRFCKFSVM RKAHEILGAF MAARGNTNAE LHSLVDNSLT EKEFEEGWDV  480
LTERYDASEN EYLRLMWETR KNWVPVYFQA DFCPFVESAG HCEVANLLFK DNVLPKDRIE  540
KFIEQYERMQ EHIVKTEEED ALQSATEPAY FSMQPIEKHA ARIYTRQIFL RAQNELYYST  600
AFNVHEIQGG YRLEKVFNYE NPEFSRNSFE VLAEPGIHAF KCQCAKFTRD GILCCHIFRV  660
FTQLGVKEIP AQYMLPRWAP KFIEERLKEY EERCSKRTEN KMRYAMLLGK MADIGKGICA  720
DGAKSGCFML ELDKIQETFG SDGGRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178457.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452ZIF50.0A0A452ZIF5_AEGTS; Uncharacterized protein
STRINGTraes_1DL_7AB06DF09.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-75FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]