PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_4B5FE030C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 65aa    MW: 7159.28 Da    PI: 10.8996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_4B5FE030C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-106311946
                           TTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqk 46
                            G++ W+ Ia++++ gRt++++k++w++
  Traes_1DL_4B5FE030C.1  6 IGSR-WSIIASKLP-GRTDNDVKNYWNT 31
                           6889.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.361137IPR017930Myb domain
SuperFamilySSF466892.03E-9238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-14234IPR009057Homeodomain-like
PfamPF002494.2E-8431IPR001005SANT/Myb domain
CDDcd001671.01E-7933No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
SLYASIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMPM PLPMRGPHYH HHAGLGAFSA  60
PATPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581616e-59AK358161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1070D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191444.11e-35transcription repressor MYB6-like
SwissprotF4JSU03e-16MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A3B6A0C37e-38A0A3B6A0C3_WHEAT; Uncharacterized protein
STRINGTraes_1DL_4B5FE030C.17e-41(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3911222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-15myb domain protein 87
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]