PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_114E430EB.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 1220aa MW: 134601 Da PI: 4.5745 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.1 | 9.7e-11 | 566 | 612 | 6 | 52 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f + e+L+++F ++yps++ +e LA++lgLt rqV WF R Traes_1DL_114E430EB.2 566 HFGPVINERLNQYFTTDQYPSRAVKESLAQELGLTFRQVNKWFESTR 612 566666789**********************************8766 PP | |||||||
2 | Homeobox | 34.8 | 2.8e-11 | 1049 | 1089 | 13 | 53 |
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++L e F++++yps++ +e LA++lgLt rqV WF rR Traes_1DL_114E430EB.2 1049 QRLHEQFKSDQYPSRAVKESLAQELGLTFRQVEKWFESRRR 1089 6899***********************************96 PP | |||||||
3 | PHD | 38.9 | 2e-13 | 224 | 279 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k Traes_1DL_114E430EB.2 224 VCATCSLqeATFNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 279 599999854455********66*********************999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.99E-13 | 215 | 282 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.7E-12 | 221 | 278 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.878 | 222 | 279 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.1E-10 | 224 | 277 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.65E-26 | 224 | 276 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 225 | 276 | IPR019786 | Zinc finger, PHD-type, conserved site |
Pfam | PF00628 | 1.8E-10 | 225 | 279 | IPR019787 | Zinc finger, PHD-finger |
SuperFamily | SSF46689 | 8.13E-11 | 555 | 613 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 555 | 612 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.2 | 558 | 618 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-9 | 560 | 622 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-10 | 561 | 612 | No hit | No description |
Pfam | PF00046 | 3.6E-8 | 565 | 612 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.977 | 1034 | 1094 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-10 | 1037 | 1098 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.74E-11 | 1039 | 1092 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-11 | 1043 | 1102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 1049 | 1103 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-8 | 1049 | 1089 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1220 aa Download sequence Send to blast |
MDKSNTSGCA EDTIETRSYA NSSLNPEALK HQSFPFPYTS LSGERKNFKR AANRGRKGSR 60 VLSSRTYPLK SSESTVRVLR SRSVADKSPS DAVQTPTERA AKKPPSDSVD TLVKPAAKRI 120 KRDRPTKGGP DDELSKIRKR IRYILNRMNY HQSFLEAYAS EGWKNQSLEK IRPEKELERA 180 KVEIVRCKLR IREAFQNLDH LLTVGKLEES LFDSEGKISS DDIVCATCSL QEATFNNDII 240 LCDGACDRGF HQNCLNPPLL TKDIPEGEEG WLCPACDCKI DCIELINELQ GTDLDINDSW 300 EKVFPEAAAV AHGPMQNDVA DLPSDDSEDD DFDPNISEEH VAGHAEGSSE EDGDEGSDSD 360 DSNFMTSSDN SEHVKEKVKV DDLGLPSEDS EDDDYDPAGP DSDKDIEEKQ DESDFTSDSD 420 EFCAEITKSC SKDEVSSGPK VGGRTNDLEG APVRPNTSMS HSKDLEIDPD VILPSTKRQV 480 QRLDYKKLYD DTYGEAPSES SDGDEWSGKS TLKEDNEERN EVDSFARKSS RGTREVHPDG 540 FHGLVNDQHA GGLTSDGSNS KAKKRHFGPV INERLNQYFT TDQYPSRAVK ESLAQELGLT 600 FRQVNKWFES TRHARAAAMK NGSQLEKQSN SRKKKSSDAT HMEVKDQPNA CKEEGIRQHS 660 PVKQDTDGGQ RTHVPPESSQ SYTKTPGLVG CPKSESRENH EKNTSSKYVG MSTDGSAEDQ 720 ILGLEPEDES SDSDDLNFIT RSGNSEPLKN REKVDDLGLP SAYSEDDDYD SDEVIEMMQS 780 SSDESNFTTS SDNPEDVKEK VDGLGLPSED SEDDDYDPAG PGSDEDIGKK QSSSEKSHSS 840 DKSENRKTKR KVDDLGLPSE DSEDDDYDPA SPDSDKDIEE KQDESDFSSD SDDFCVEIAK 900 SCSGQEGVPS GAKVGGDRTD DLEGTTICAN AAISNLPSKD PEMDQYVVLP VSARQKVQSP 960 DSKKLAAYGK APSDSSYSEE LSKKGTPEKD NGKESEAGSF VRQINEFTPQ RSQQSFHGSV 1020 NGQNAEELLT PNGSSTTGQK RQYGPIINQR LHEQFKSDQY PSRAVKESLA QELGLTFRQV 1080 EKWFESRRRH IRVASKKSST HVENHSTKEN PNVCKSDAVN EDTPSGILNE GITQDGPLKQ 1140 DIGGGLRTNA SPLNSSQRYT TPLVRRPKGE SRENHMKNTS SSSASSPKGS DAGYAVLALE 1200 ALDEKTRSKM LQELKKRKIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | KIRKRIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368628 | 0.0 | AK368628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077C19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161929.1 | 0.0 | homeobox protein HOX1A-like | ||||
TrEMBL | A0A3B5ZYS1 | 0.0 | A0A3B5ZYS1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DL_114E430EB.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4393 | 37 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 5e-75 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Publications ? help Back to Top | |||
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