PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BS_E68807072.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 512aa MW: 55729.9 Da PI: 6.9675 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.6e-17 | 184 | 233 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Traes_1BS_E68807072.2 184 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 233 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.3 | 8.1e-13 | 276 | 326 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g Traes_1BS_E68807072.2 276 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 326 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-9 | 184 | 233 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-16 | 184 | 242 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-32 | 185 | 247 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.82E-11 | 185 | 243 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 185 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-17 | 185 | 242 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-8 | 276 | 326 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-16 | 276 | 335 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.29E-24 | 276 | 336 | No hit | No description |
SMART | SM00380 | 1.9E-31 | 277 | 340 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.277 | 277 | 334 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 277 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 278 | 289 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 316 | 336 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF 60 SILRSSASAE GENDVGADDD EEEATPSPPP PPTRHYHQHL LQPQQLVTQE LFPAAATAGG 120 PPPMSVPQHW AELGFFRPAA PPPDMRILQM QQQQLQVHAQ PPPPPAAQPP VAKKSRRGPR 180 SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF 240 NLSDYEDDMK QMKGLSKEEF VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK 300 YIYLGLFDNE VEAARAYDKA AIKCNGREAV TNFEPSTYDA ELLSEVAAEG ADVDLNLSIS 360 QPTSQSPKRD KSSLGLQLHH GSYEGSELKR PKVDAPPEMV AIPHRYPLLT EHPPIWHGQS 420 YPIFLNNEDA ARDHSRRPEV ATGGVPTWAW SVSHPPPTQP MPLFSSSSSA AASSGFSKTA 480 AAAAPGAPSA SFRFDPMAPS SSSSNQHHHH PR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX473823 | 0.0 | JX473823.2 Triticum aestivum cultivar Zhoumai 18 starch negative regulator RSR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170161.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 0.0 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | W5ABU9 | 0.0 | W5ABU9_WHEAT; Target of EAT1-B1 | ||||
STRING | Traes_1BS_E68807072.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-101 | related to AP2.7 |
Publications ? help Back to Top | |||
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