PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BS_D1FCBFBE8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 506aa MW: 54335.5 Da PI: 7.0285 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.7 | 7.6e-17 | 336 | 382 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Traes_1BS_D1FCBFBE8.1 336 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 382 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-20 | 330 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.019 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.34E-18 | 335 | 386 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-20 | 335 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-14 | 336 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-17 | 338 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MLLRRSEPGN ELEELLWDNG PALRRAASPF PPFSCSAAGT MKAQELAKHP ASATAMAQGH 60 DDDAVPWLQH YPIIGVDDDG SGGDTAPLPQ DYFSTLFPGF SELPAAVASR DAGAPSTSHA 120 AVVVPPLPEP PAPPKQQQQA PRSTGEGVMN FSFFSRPLQR SLPQASTRTS AAGSKSVEST 180 LLQTNRLRST PLFSEQRTAW LQPPKESPAA VSASRPPAPP VPVRHAAEPA AALPQRLQPE 240 ARAAALPPRL QPEVRAAALP QRLQSEARAS EMPPPPATAT TSSVCSDNGE RSQLKRSSHQ 300 TLEWSVSQDD EDLDDEAGGL RRSAARSTKR GRTAEVHNMS ERRRRDRINE KMRALQELIP 360 NCNKIDKASM LEEAIEYLKT LQLQVQMMST MGTAGLCMPP MMAMQHMQMP PMAHFHHHHL 420 GAMGFGMGPF DPRLVAAAGA AQFPYPMMPG APIFGGHAMP PPPPFHQAAV AGAHMAPGPV 480 TNDAATAAQA EHEQTPGDHP QVPRTM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 345 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376594 | 0.0 | AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164967.1 | 0.0 | transcription factor APG-like | ||||
Swissprot | Q6AT90 | 2e-80 | APG_ORYSJ; Transcription factor APG | ||||
TrEMBL | A0A446JLU8 | 0.0 | A0A446JLU8_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BS_D1FCBFBE8.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-30 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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