PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_CF75D4172.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 383aa    MW: 43298.1 Da    PI: 8.779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_CF75D4172.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-0686106323
                            ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                            C+ Cg +F+ + +Lk+H+++H
  Traes_1BS_CF75D4172.2  86 CKECGARFKKPAHLKQHMQSH 106
                            *******************99 PP
2zf-C2H219.52.6e-06112136123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + C+   C+ s+srk++L+rH+ tH
  Traes_1BS_CF75D4172.2 112 FACHvdGCPFSYSRKDHLNRHLLTH 136
                            78*********************99 PP
3zf-C2H211.40.001141166123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            + Cp   C++ Fs k n +rH    H
  Traes_1BS_CF75D4172.2 141 FMCPmeGCNRKFSIKGNIQRHVEEfH 166
                            78*******************98777 PP
4zf-C2H219.72.2e-06178202123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp  +Cgk F+  s L++H  +H
  Traes_1BS_CF75D4172.2 178 FICPeaNCGKAFKYASKLQKHEESH 202
                            78*******************9988 PP
5zf-C2H2218.5e-07269293223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            kC+  dC++sFs ksnL++Hi+  H
  Traes_1BS_CF75D4172.2 269 KCNfkDCKRSFSKKSNLHKHIKAvH 293
                            79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355113456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.71384111IPR007087Zinc finger, C2H2
SMARTSM003550.00784106IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-585102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576674.33E-1197138No hitNo description
Gene3DG3DSA:3.30.160.601.4E-13103138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0018112136IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307112141IPR007087Zinc finger, C2H2
PROSITE patternPS000280114136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-7139167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-6139167No hitNo description
PROSITE profilePS501579.245141171IPR007087Zinc finger, C2H2
SMARTSM003550.029141166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-8173202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-5174204No hitNo description
SMARTSM003550.0047178202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427178207IPR007087Zinc finger, C2H2
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
SMARTSM003551.9210235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212235IPR007087Zinc finger, C2H2
SMARTSM0035512238259IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.53E-8249306No hitNo description
Gene3DG3DSA:3.30.160.608.8E-7249290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0048268293IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.36268298IPR007087Zinc finger, C2H2
PROSITE patternPS000280270293IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4292321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6299325IPR007087Zinc finger, C2H2
SMARTSM003554.8299325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280301325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGEGDPDGGC VVGATATSTS AASAAAPVRD IRRYKCEFCD VVRSKKRLIR DHVLEHHKDE  60
VDGLDEYNLG GGGGSAPPGK EIGHGCKECG ARFKKPAHLK QHMQSHSLER PFACHVDGCP  120
FSYSRKDHLN RHLLTHQGKL FMCPMEGCNR KFSIKGNIQR HVEEFHEDGP QRGGKKEFIC  180
PEANCGKAFK YASKLQKHEE SHVNLDYTEV ICCEPGCMKT FTNVECLKAH NQSSHQYVQC  240
DICDTKQLKK NFKRHQRMHE GSFVTERIKC NFKDCKRSFS KKSNLHKHIK AVHEQSRPFT  300
CGFSGCGQKF SYKHVRDNHE KSSVHVLFEG DFVEADEQLR PHPGGRKRKP ISVDTFMRKR  360
VAAPDAPPAY SDGTEYLRWL LSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A9e-188823219157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D9e-188823219157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728170.0AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.10.0transcription factor IIIA isoform X1
TrEMBLA0A3B5YRW00.0A0A3B5YRW0_WHEAT; Uncharacterized protein
STRINGTraes_1BS_CF75D4172.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-91transcription factor IIIA
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]