PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BS_B44ECE28C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 30149.6 Da PI: 5.4627 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.4e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv v++lG ++W+ a+ g++Rt+k+c++rw +yl Traes_1BS_B44ECE28C.1 16 KGPWTENEDAQLVWFVRLLGERRWDFLAQVSGLRRTGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l++ +++++G++ W++Iar+++ gRt++++k++w++++ Traes_1BS_B44ECE28C.1 69 RGRITADEERLILSLHAEWGSR-WSRIARKLP-GRTDNEIKNYWRTHM 114 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.521 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-19 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-7 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.823 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MCNNSGGRGG AMAARKGPWT ENEDAQLVWF VRLLGERRWD FLAQVSGLRR TGKSCRLRWV 60 NYLHPGLKRG RITADEERLI LSLHAEWGSR WSRIARKLPG RTDNEIKNYW RTHMRKKAQE 120 EKMLAKNKAS SSPSSSSADS TSLTTTTCSA SPTATSSSAA TTEEAPQEST TSMDDEAEEE 180 AATSASEEKK AEVVQYCSPV DMDQLWNDIA ASERYPEMMM SWGVAGHVVM PAPAVEPSSP 240 VWEFCEDYSL WRIDDQEYYN KIDQHALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-25 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951904 | 0.0 | JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156198.1 | 1e-159 | myb-related protein MYBAS2-like | ||||
TrEMBL | A0A3B5YSD2 | 0.0 | A0A3B5YSD2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BS_B44ECE28C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-59 | myb domain protein 59 |
Publications ? help Back to Top | |||
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