PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BS_282C4747C.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 1431aa MW: 154545 Da PI: 6.4905 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.3e-09 | 445 | 487 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE e + + + +G++ +++I++ ++ ++t +c+++++k+ Traes_1BS_282C4747C.2 445 PWTHEEKEVFMQMLASFGKN-FSKISNFLQ-HKTTADCVEFYYKH 487 8*****************99.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-14 | 428 | 490 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.727 | 441 | 492 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 442 | 490 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-6 | 444 | 487 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 444 | 489 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.846 | 652 | 703 | IPR017884 | SANT domain |
SMART | SM00717 | 6.9E-5 | 653 | 701 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-5 | 656 | 696 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.56E-8 | 656 | 698 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-4 | 657 | 695 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1431 aa Download sequence Send to blast |
MSSKDIPGAE VQAYNDEIPI KLGQLDGDRI GSLANVLAEL LQHEDSCSGD SRRLTNSSKL 60 LLLKENIARE LEKTELEIDS LECELKSVST ESENKALEDA ENPSPSSGTS KILAKPATSK 120 VLAKPETSKV LAKPEICGTS SSPKEQGVLT PCKLPVEQEA DANGVDLMDV VTAPVRSVTA 180 VSSGESVACP GVVAEAEVAV AADVAPLKPS EGTGSQIDAH CPRQEPSLSH DNVSSMKADG 240 SNALSTRQCS HRIDSRNLIP SIIAVNNDIA KEFNELVFKP LPAGQPCLGL SSQMKNDLSV 300 RKKLGIHKNR LRFKEQALTF KFKVLRHLWK EDVRLLSVRK QRPKSNKRTD QSNRASQSGS 360 QRQRSSIRSR LGMPAGNLST FPTTEISDVA NKMFTEFQFK RCRNYLKMPA LIIDEKEKES 420 ASFVSKNGLI EDPVSVEKER SVINPWTHEE KEVFMQMLAS FGKNFSKISN FLQHKTTADC 480 VEFYYKHHKS DSFREVKKLL DLRQQQPTGN YLGTKSGKKW NPENAASLDM LGNAASVVAA 540 HGLDYANRVE RDTEKSIIRT SCKSDVSAVA KGSLDKDGIA NVSLHERESV AADVLAGICG 600 TLSPEGMGSC ITSSADHGQK IGATRMEYLI ATPEADKSFD EEDDLSDQEC EVDSVDWNDN 660 EKSLFIEALN NHGKDFARIS SYVKSKSYEQ CKVFFSKARI SLGLDLIYQQ TTDTGLPTGD 720 ASGGRSDTDE ACAAEMDSPI CSTQSPVEME MEVCPSADKT LQGHLLSGIT FKQSETDRSD 780 GPEIVDLTIE EGEIKADDTN NCNIPVDHRQ SSEATHQSTP SCAPIDINSS ESTGSMENRE 840 HSNQVSVHGN GAMASSTEQP VGAHLEISSS LHIVEVIEPS KASEKICIQV STREHAPESG 900 APISAGNLTT PVFLPGVIQS SNVYEGICTK ESSVEGPSQQ APLSAHMKAG NLTLSVCLPG 960 EHCSKVSSNE GPSKHAPESA HVKAGNSTPS VCLPGESGSK ENVAHFSDMA GVSCIRPAFT 1020 LSYQQSVPTD LLPAKPKSQV TPLTPKDLMP VQFSSDLPDP TSIRFEGIAS ITSPNFGDHA 1080 NRVSNTPGPK DMSKFPVFNE QSRSQHDVLF RNIDGYLQHR RNHHLAVDIP AFSDSTVSGS 1140 VGISHPDQFT ITKYQNGRSG SSGLSSTSAG FLMNGSSKEL REGQLKPCSH KASTESCDQV 1200 KRPGDVKLFG KILSHQSSLQ SSGSSSNVTR SKPPPPTTAA GLLGSGMDRM VYSSRPTNTA 1260 HFGQDERVVR SYTHLDGSTV QPESSLFRVA KCQRSSLASV PFYSAKNGTL GVLAEYQQPL 1320 RQQLPSDPKR LESYADLQKR NGIELISGFQ QQQPGKAARL GGAGILVSPV SDPVAALKAQ 1380 YGSSSKFLGK DADHPWKDIG NRKMQIAYLA VMLDMSIIGC GPRGGRTPHA M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 8e-16 | 403 | 494 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 8e-16 | 403 | 494 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148930.1 | 0.0 | uncharacterized protein LOC109734119 | ||||
TrEMBL | A0A446JKN8 | 0.0 | A0A446JKN8_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BS_282C4747C.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 3e-70 | MYB family protein |
Publications ? help Back to Top | |||
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