PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BS_1202C8C0D.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 150aa MW: 16579.5 Da PI: 10.3884

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BS_1202C8C0D.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	93	143	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+ Traes_1BS_1202C8C0D.2 93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143 79***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.403	85	145	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.1E-41	85	144	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-29	86	145	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.45E-38	86	144	No hit	No description
PRINTS	PR00404	1.2E-32	87	107	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	87	141	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.1E-27	94	141	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-32	107	122	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-32	122	143	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MATTGWGNSR YARRGGDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFPSY LQRRVQEVAA 60 QENPVKESAS PGSGSGSPGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 120 VLCDAEVALI VFSGRGRLYE YSNNRCSPLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
5f28_A	3e-20	85	142	1	58	MEF2C
5f28_B	3e-20	85	142	1	58	MEF2C
5f28_C	3e-20	85	142	1	58	MEF2C
5f28_D	3e-20	85	142	1	58	MEF2C
6c9l_A	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	85	144	1	60	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB084577	1e-133	AB084577.1 Triticum aestivum WAG mRNA for MADS box transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230317.1	2e-65	MADS-box transcription factor 58-like isoform X3
TrEMBL	A0A446JQM1	1e-106	A0A446JQM1_TRITD; Uncharacterized protein
STRING	Traes_1BS_1202C8C0D.2	1e-107	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.2	6e-37	MIKC_MADS family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]