PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_03473DC22.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 673aa    MW: 75525.8 Da    PI: 7.6731
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_03473DC22.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-115776433199
                            .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            ++   +tl+   ++++W+ ++     ++ ++l+++W +Fv +n++++gD+++F   +  ++ +++v+++r+
  Traes_1BS_03473DC22.2 577 NG--AVTLQMpGKSEKWRPRF--FIEKDNCMLAGNWLDFVCDNQVQAGDICIFVPAKGgERSTFTVHIIRA 643
                            33..45555534679******..66667799***********************7755599999***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-15536644IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-15536643IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-12543642No hitNo description
PROSITE profilePS508639.7544644IPR003340B3 DNA binding domain
PfamPF023621.3E-8576643IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MRRSKGSGRR RAAEERKLVR MAEEAAAASS MQAAAAAALA SLHLPPPEPA ETDNQDRKFF  60
GRGARIKRKA KRKWGFVGGE AGAVDSGGLR PRLSHRRSTC RGGVGSMDEV LHGEVGIRSR  120
FSAGRIREIM RGLTPRQQGY VAKYGFEHFN RIGAFSVHEP LTEWIMGKIN PPFSEFRINA  180
DKTIVFSKPL VQKILGVPTG ERPFVLHGQK SDKIKELRDL YLNNGLRATI PHCVSLLKNN  240
EDEESFMRTF LLIALAAVLT PTTGNTIDLD YLWAFEDMSK VQDLDWAGHI TEHLMDEVQK  300
FQYKSREEKM RDFWVGGCLP LLTIAYMDHL DLPRGRIVDH EINYSVPRIC HVSKDDFQFA  360
AIADLHRQHF KFATFGILPF RDRTPYTDNP VTDTEVAEDD LRILSNDQVL SGQWELVEVH  420
EERIDELVKE TQPEVLGFAE ASIDRPRPGR TDIGSNQGTK KSASCERDSS SHCRNTAKAA  480
VTPSSSEKSV EDIAREYESS ESDDHPTPPE ADYGVIFRSF LSGTQMERVN MLIHKIKPET  540
IVFVATMRKC DVQLPTPLLI ISKERSLAAA AHFPHENGAV TLQMPGKSEK WRPRFFIEKD  600
NCMLAGNWLD FVCDNQVQAG DICIFVPAKG GERSTFTVHI IRAEATHRRG VKRVRSSHDS  660
PVGVEGMANP DAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201512.10.0uncharacterized protein LOC109787361
TrEMBLA0A3B5YR750.0A0A3B5YR75_WHEAT; Uncharacterized protein
STRINGTraes_1BS_03473DC22.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP492169
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]