PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_E39CD252E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 275aa    MW: 29384.4 Da    PI: 4.4338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_E39CD252E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1890140155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Traes_1BL_E39CD252E.1  90 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 140
                            68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
PfamPF008477.0E-1390140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3191150IPR001471AP2/ERF domain
SMARTSM003807.6E-3691155IPR001471AP2/ERF domain
PROSITE profilePS5103223.30191149IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1991149IPR016177DNA-binding domain
CDDcd000182.22E-2992151No hitNo description
PRINTSPR003671.4E-1092103IPR001471AP2/ERF domain
PRINTSPR003671.4E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAPARELQET SSSSSSSTSS YTTSSTSMSC SSTVTDSSSC PSSPASAANA VKAVPRKRQL  60
DEEEGGREET EEGKTKTTKK SKRSSDGKHP VYRGVRMRAW GKWVSEIREP RKKSRIWLGT  120
FPTAEMAARA HDVAALAIKG ARSAHLNFPE LADVLPRAAS PAPKDVQAAA ALAAAFTSSP  180
PPLSTDQSEE EEGLIQEETV KNDAGADATT PPESAATATS CGAAEQAEEE LQLFDLPDLL  240
LDIEDGFGFS TMWAPLPDVE EVNADLRLEE PLLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1683150673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738740.0AK373874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046B05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150034.11e-104ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3B5YXQ90.0A0A3B5YXQ9_WHEAT; Uncharacterized protein
STRINGTraes_1BL_E39CD252E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]