PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_E0397871B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 281aa    MW: 30565.2 Da    PI: 9.9678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_E0397871B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-174795355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr+++ +grWv+e+r+p   + r kr++lg+f+ta +Aa a+++a+ +++g
  Traes_1BL_E0397871B.1 47 YRGVRQRR-WGRWVSEVREP---N-RgKRHWLGTFDTAVDAALAYDRAAVAIYG 95
                           9****998.*******9998...3.35*********************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.93146103IPR001471AP2/ERF domain
SMARTSM003808.9E-3246109IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2146104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-3046104IPR001471AP2/ERF domain
PRINTSPR003675.6E-94758IPR001471AP2/ERF domain
CDDcd000181.85E-2847103No hitNo description
PfamPF008475.5E-114794IPR001471AP2/ERF domain
PRINTSPR003675.6E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MCISLFACST IRTKRARPKS SATLRIKTPV ASPPGGEGGP EDRDHMYRGV RQRRWGRWVS  60
EVREPNRGKR HWLGTFDTAV DAALAYDRAA VAIYGSRAIV NFPSAFFIST AQPVQCHSPS  120
SSPATAASVL TEHGVKPMMA AASILDEHEI KPVITASVSD EREVKPMVAA SVFGEREVKP  180
MVAASVFHER EVKPMVPASV FGEREVKPVV AASVFGEREV KPMVAASVFH EREVKPMVPA  240
SVFGEREVRP MVAASVSGER EVKPMVAASV FGEREVKPMV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1847103663ATERF1
3gcc_A2e-1847103663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169668.11e-158dehydration-responsive element-binding protein 2D-like
TrEMBLA0A3B5Z0A70.0A0A3B5Z0A7_WHEAT; Uncharacterized protein
STRINGTraes_1BL_E0397871B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-07ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]