PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_DF66FC4FE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 57aa MW: 6358.18 Da PI: 7.8077 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 28.6 | 1.7e-09 | 1 | 54 | 319 | 373 |
GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ GF + +++++++++++ll++++ g+ v+ e++ lv++Wk+++ v+++aW Traes_1BL_DF66FC4FE.1 1 MRRKGFAGAGFGQDEVAEVRHLLSEHA-TGWGVKREEDMLVFTWKGHAAVFTTAW 54 8999***********************.99************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.9E-7 | 1 | 54 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MRRKGFAGAG FGQDEVAEVR HLLSEHATGW GVKREEDMLV FTWKGHAAVF TTAWAPN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154951.1 | 1e-31 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 6e-15 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A446K5Z1 | 2e-33 | A0A446K5Z1_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_DF66FC4FE.1 | 2e-34 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12227 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 2e-17 | GRAS family protein |
Publications ? help Back to Top | |||
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