PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_BCA60D8B6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33291.3 Da    PI: 7.1419
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_BCA60D8B6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-18137191256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++keq   Le  F+++++++ e++ +LA++l+L  rqV vWFqNrRa+ k
  Traes_1BL_BCA60D8B6.2 137 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSRLANQLSLRPRQVEVWFQNRRARTK 191
                            678899***********************************************98 PP
2HD-ZIP_I/II118.73.1e-38137225189
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlskeq+++LE sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++dal++en++L++ev+eLr
  Traes_1BL_BCA60D8B6.2 137 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSRLANQLSLRPRQVEVWFQNRRARTKLKQTEADCEQLKRCCDALARENRKLQREVAELR 224
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 e 89 
                            +
  Traes_1BL_BCA60D8B6.2 225 A 225
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-17121191IPR009057Homeodomain-like
SuperFamilySSF466896.42E-18127194IPR009057Homeodomain-like
PROSITE profilePS5007116.973133193IPR001356Homeobox domain
SMARTSM003893.0E-14135197IPR001356Homeobox domain
PfamPF000462.5E-15137191IPR001356Homeobox domain
CDDcd000863.09E-15137194No hitNo description
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
PfamPF021838.0E-11193225IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-15193236IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MELELSLGDL PAPVKANNTM PAPATCQGED HDDLALGLRV MATERADQDN QRTSIETAEG  60
EDSDEACREL PVRASPLRQA SGANSRGFDV NAPVPVDDRA LIARSLSPPS MHMEVPVAQG  120
VDEEASEEED NRGGRVRKKL RLSKEQSAFL EGSFKEHSTL TLEQKSRLAN QLSLRPRQVE  180
VWFQNRRART KLKQTEADCE QLKRCCDALA RENRKLQREV AELRASRAPY PLYNLNHHLS  240
GFSTALPACS SCDATTRSTV SSVSSSPGPS PMSTLFPGRP HFGPFTVTHP VLRLRRQPSA  300
TL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RVRKKLR
2185193RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494280.0AK249428.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf26g21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185729.10.0homeobox-leucine zipper protein HOX7-like isoform X1
SwissprotA2X6746e-81HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
SwissprotQ0E0A65e-81HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A3B5Z3H10.0A0A3B5Z3H1_WHEAT; Uncharacterized protein
STRINGTraes_1BL_BCA60D8B6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-48homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]