PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_B8B4C1FB6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 297aa MW: 32461.1 Da PI: 12.3644 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 90.7 | 1.1e-28 | 184 | 284 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL Traes_1BL_B8B4C1FB6.1 184 FDKTVTPSDVGKLNRLVIPKQYAEKHfplqlpsasavvP---GecKGMLLNFDDAVGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 268 89***************************8877776652...144899**************************************** PP -TT-EEEEEE-SSSEE CS B3 75 kegDfvvFkldgrsef 90 +gD v F+++ + + Traes_1BL_B8B4C1FB6.1 269 HAGDAVGFYRSASGNN 284 *********7654444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-38 | 178 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-29 | 181 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-26 | 183 | 279 | No hit | No description |
SMART | SM01019 | 4.5E-19 | 184 | 296 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 184 | 294 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-25 | 184 | 287 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
AAARPRARRP LRRRPGRRPS RCSASAVGPA RSWTRRSQAR RQTPAASAGC RRPSTRAWCR 60 SPTGGGVRRS TSATSASGWA RSRGRPRLRA PMTRRRSASA AAMPSPTSAR SPSPTPATPP 120 SSASSPPAPR PRSSTCCAST STPTSSRSTS APXXXXXXXX XXXXXXXXXX XXXXXAAARR 180 EYLFDKTVTP SDVGKLNRLV IPKQYAEKHF PLQLPSASAV VPGECKGMLL NFDDAVGKMW 240 RFRYSYWNSS QSYVLTKGWS RFVKEKGLHA GDAVGFYRSA SGNNQLFIDC KIRSKST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-49 | 181 | 296 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 18 | RRRPGRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009310 | 0.0 | BT009310.1 Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A287GHZ4 | 1e-102 | A0A287GHZ4_HORVV; Uncharacterized protein | ||||
STRING | Traes_1BL_B8B4C1FB6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 5e-51 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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