PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_B4400C4B7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 723aa    MW: 82675.6 Da    PI: 5.9749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_B4400C4B7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.12.1e-11113194291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            +Y+++A   GF   +  +  +      +k +  C+++ k +++++  +++r+  ++++ +C+a+ +vk   +g+we t++++eHnH+l
  Traes_1BL_B4400C4B7.1 113 YYSAHALLSGFVAIRGPNFMR------KKFHVECNRSRKLAPSQDL-KRKREVYSVNKAQCEARAVVKPV-KGQWEYTSVRSEHNHPL 192
                            8999*******9999988777......456799*********9988.99999****************99.9**************** PP

                   FAR1  90 ap 91 
                            +p
  Traes_1BL_B4400C4B7.1 193 CP 194
                            97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-9113194IPR004330FAR1 DNA binding domain
PfamPF105511.8E-29315408IPR018289MULE transposase domain
PROSITE profilePS509669.025598634IPR007527Zinc finger, SWIM-type
PfamPF044347.9E-4605626IPR007527Zinc finger, SWIM-type
SMARTSM005750.0074609636IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDGYAIISSD QEQPVIGADW SSGALSDELV IHANSADLSL QLAEEQSQLH DIMGINEMPI  60
NDIGSASDSD GSSGNETDKE PGKYFYPGFE ELVNPRPPEV GMRFPTLEDA TRYYSAHALL  120
SGFVAIRGPN FMRKKFHVEC NRSRKLAPSQ DLKRKREVYS VNKAQCEARA VVKPVKGQWE  180
YTSVRSEHNH PLCPSPSLTK FFLSCKHMSA EEKSFLRALQ QSSIHPKKAM KIFKRMRGIL  240
GSLPFNTKDA NTSQCAEQQG KPNSDVETTV KHLKELELQN PCVSITMQTD EDSIVRSLFW  300
TDARSRLDYE IFGDVLSFDT TYSTISHNML FTSISGMNEH GRTLVFGYAL LQDQKAETFK  360
WMFQTFLHVM GGKMPRAIIT DQDEAIAKAI SEVMPQVKHR FCKFHVMRKA REKLGGFIAA  420
RGNINSELHA LVNNSLTETE FEEGWAALIE RYSASENEYL QLLWETRKEW VPVYFREDLY  480
PFVETTGCCE GANSLFKDYV LPKDRIEKFL ERYEDVQERI METDDEDRLQ SRTEPSCFSM  540
QPIEKHAARI YTRQIFLKVQ RELLHSTAFN VQEIQTGTVY RLEKVSAYEN PEFDRNSFEL  600
LVEPSTNAIK CECAKFTRDG IPCCHIFRLF TQFGVNEIPG QYIVPRWTAK FKEEQMKQYR  660
EKCLDSPGID QSENTMRYAM LLSKVADIGK EICGDGSKCD KFRLELDTIQ GKTGNDGMRD  720
TSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165335.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452ZIF70.0A0A452ZIF7_AEGTS; Uncharacterized protein
STRINGTraes_1BL_B4400C4B7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-81FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]