PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_AF69F4610.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 482aa    MW: 51322.2 Da    PI: 5.709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_AF69F4610.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.3e-10267292530
                            HHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                            hne Er+RRdriN+++++L++l+P  
  Traes_1BL_AF69F4610.1 267 HNESERKRRDRINQKMQTLQKLVPXX 292
                            ************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.82E-8260292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.981262326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9266293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-8267292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-7267290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNNQCVPSWD LDETVGAGLN PVSTRSAQRM ASGDSGLTGP VAMPMPDQYD EVAELTWEKG  60
NIFWQGLLNR SVPKYPAAPA PAQMHAIGGA GDHRETLEAV VGEAAARLSS QSTSHLGQPL  120
PAAVAPWLGV GAPADGLVPC ARGDDQAEGG VRRKRARQVG EDGRVCASQG SAAPGRGESS  180
LLTLEPCGTG ADDLCGFTTT NNSTSLDHGS PETENTSFGG GASDSRCFSR RSQRDGLCDE  240
AENVVIKGGA PMRSSISTKR SRAAAIHNES ERKRRDRINQ KMQTLQKLVP XXXXXXXXXX  300
XXXXXXXXXX XINVDLLFSI DADRQGIDAG RGDRPLEAAA GNGADDEPDE QHDDAHGHAA  360
ASPDVRHGQH GPDGPDGADG PGNDEHGRAT RAARLPGPHP AHDAGVHPFR RHAALEXXXX  420
XXXXXXXXVP DAYSAFLACQ AAQQNTQQQQ QAQPNGMEAY SRMMAMYQKL SQQQTRPGSS  480
KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614200.0AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678140.0AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164230.10.0transcription factor UNE10 isoform X1
RefseqXP_020164233.10.0transcription factor UNE10 isoform X2
TrEMBLA0A446JY760.0A0A446JY76_TRITD; Uncharacterized protein
STRINGTraes_1BL_AF69F4610.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-23bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]