PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_A75EDBFD9.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 127aa MW: 14403.6 Da PI: 10.6199 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.9 | 4.5e-10 | 13 | 52 | 51 | 90 |
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r+++ ++r+gC+a++++ +++d+ w++++ + HnH+++ Traes_1BL_A75EDBFD9.2 13 IRENSRSSRCGCNAMIRLLRSNDKGWYIAEHKDAHNHPMS 52 578889*******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-7 | 14 | 52 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MQEIVCACAG KPIRENSRSS RCGCNAMIRL LRSNDKGWYI AEHKDAHNHP MSLTCGQKLH 60 WKSHRHIDRY TKDLVKQLRD NNVGLGKVFS IVGSFFGSVD NVPFTKRSLK TLCRKLNRVS 120 STTSSVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-167 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155776.1 | 2e-79 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2X0SJT3 | 3e-78 | A0A2X0SJT3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BL_A75EDBFD9.2 | 5e-91 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Publications ? help Back to Top | |||
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